RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RUBCNQ92622 972 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CNDP1Q96KN2 507 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 TSR3Q9UJK0 312 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 EIF2S3P41091 472 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 Q3C1V9 767 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 OTUD7BQ6GQQ9 843 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 EIF4A3P38919 411 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 PHKG1Q16816 387 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 DCUN1D1Q96GG9 259 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 RPF1Q9H9Y2 349 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 MLXIPLQ9NP71 852 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 NDUFA10O95299 355 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CCND2P30279 289 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 SYTL3Q4VX76 610 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 TRAPPC3LQ5T215 181 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 THEM5Q8N1Q8 247 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 AGR3Q8TD06 166 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CD58P19256 250 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CCND1P24385 295 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 FKBP3Q00688 224 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF827Q17R98 1081 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 NIM1KQ8IY84 436 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ACAP3Q96P50 834 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ASNSD1Q9NWL6 643 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CCDC130P13994 396 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 TPP2P29144 1249 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 TRIM62Q9BVG3 475 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 TLR2O60603 784 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 CSPG5O95196 566 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 PDZK1Q5T2W1 519 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 STKLD1Q8NE28 680 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 P2RX5Q93086 422 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF577Q9BSK1 485 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 SYNJ1O43426 1573 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 IQGAP2Q13576 1575 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ROR1Q01973 937 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 RSBN1Q5VWQ0 802 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DCAF15Q66K64 600 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 ERICH1Q86X53 443 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PKN2Q16513 984 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 ARMC4Q5T2S8 1044 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF658Q5TYW1 1059 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 HEATR6Q6AI08 1181 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 HIC2Q96JB3 615 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 USP28Q96RU2 1077 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DYRK4Q9NR20 520 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 TCP11X1B4DZS4 312 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 USP1O94782 785 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 CCT3P49368 545 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 NFIL3Q16649 462 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DCAF4L1Q3SXM0 396 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 FBXO11Q86XK2 927 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 SH3TC2Q8TF17 1288 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PRMT1Q99873 361 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 C20orf96Q9NUD7 363 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 TMEM63CQ9P1W3 806 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PCDHB8Q9UN66 801 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 KIF1BO60333 1816 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 EIF4G3O43432 1585 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DCTN2Q13561 401 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DPP8Q6V1X1 898 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 KCNK16Q96T55 309 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 UNC45AQ9H3U1 944 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 KIF24Q5T7B8 1368 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 LONP2Q86WA8 852 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 C18orf25Q96B23 403 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DSCC1Q9BVC3 393 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PDE9AO76083 593 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 SERPIND1P05546 499 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 GRIN2BQ13224 1484 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 C1DQ13901 141 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 RASGRF1Q13972 1273 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 MAPKAPK5Q8IW41 473 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PCDH11XQ9BZA7 1347 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 PCDH11YQ9BZA8 1340 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 UBA6A0AVT1 1052 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 ATP6V1C1P21283 382 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 THOC7Q6I9Y2 204 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM173BQ6P4H8 233 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 KRT28Q7Z3Y7 464 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 DNAJC9Q8WXX5 260 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 POTEIP0CG38 1075 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 LRRC8DQ7L1W4 858 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 AGGF1Q8N302 714 aaeCLIP14.06□□□□□ -0.163e-6■□□□□ 11.3
CCDC88A-204ENST00000413716 TSPAN17Q96FV3 270 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 TRIM51Q9BSJ1 452 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 AP5M1Q9H0R1 490 aa14.06□□□□□ -0.16
CCDC88A-204ENST00000413716 GNPATO15228 680 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ECDO95905 644 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ALDH6A1Q02252 535 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ALFQ53S48 1182 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 SCARA5Q6ZMJ2 495 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ZBED8Q8IZ13 594 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 THAP9Q9H5L6 903 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 GTF2A1LQ9UNN4 478 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TCHHQ07283 1943 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF544Q6NX49 715 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 SMARCAL1Q9NZC9 954 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 CHMP2BQ9UQN3 213 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 SESN2P58004 480 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms