RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 DHX58Q96C10 678 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 NTPCRQ9BSD7 190 aaKnown RBP12□□□□□ -0.49
CHMP3-205ENST00000409810 C11orf84Q9BUA3 381 aaPredicted RBP12□□□□□ -0.49
CHMP3-205ENST00000409810 PANK2Q9BZ23 570 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 ZHX3Q9H4I2 956 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 RSAD1Q9HA92 442 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 IPPQ9Y573 584 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 PCDHB12Q9Y5F1 795 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 MRPL42Q9Y6G3 142 aaKnown RBP12□□□□□ -0.49
CHMP3-205ENST00000409810 ZMYM2Q9UBW7 1377 aa12□□□□□ -0.49
CHMP3-205ENST00000409810 TRIP11Q15643 1979 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 PRRC2BQ5JSZ5 2229 aaKnown RBP11.99□□□□□ -0.49
CHMP3-205ENST00000409810 A0A087X0B3 334 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 K7ENM7 598 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 TRAK2O60296 914 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 NPTXRO95502 500 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 GAP43P17677 238 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 IGFBP4P22692 258 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 BMPR1AP36894 532 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 NCKAP1LP55160 1127 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 PTPROQ16827 1216 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 CLLU1OSQ5K130 101 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 UBXN11Q5T124 520 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 ATF7IP2Q5U623 682 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 DYMQ7RTS9 669 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 MRPL10Q7Z7H8 261 aaKnown RBP11.99□□□□□ -0.49
CHMP3-205ENST00000409810 FAM178BQ8IXR5 827 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 DDX12PQ92771 950 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 KCNN1Q92952 543 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 LPPQ93052 612 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 CASD1Q96PB1 797 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 EIF2AQ9BY44 585 aaKnown RBP11.99□□□□□ -0.49
CHMP3-205ENST00000409810 PDZD7Q9H5P4 517 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 RNF19AQ9NV58 838 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 KANSL3Q9P2N6 904 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 SEL1LQ9UBV2 794 aa11.99□□□□□ -0.49
CHMP3-205ENST00000409810 TRANK1O15050 2925 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 PLXNA4Q9HCM2 1894 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 EPOPA6NHQ4 379 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 H3BNC9 293 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 POLR2DO15514 142 aaKnown RBP11.98□□□□□ -0.49
CHMP3-205ENST00000409810 MAPTP10636 758 aaKnown RBP11.98□□□□□ -0.49
CHMP3-205ENST00000409810 CMA1P23946 247 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 PPM1AP35813 382 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 RNASELQ05823 741 aaKnown RBP11.98□□□□□ -0.49
CHMP3-205ENST00000409810 GPM6BQ13491 265 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 E2F4Q16254 413 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 NOMO2Q5JPE7 1267 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 HAUS6Q7Z4H7 955 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 CEP57L1Q8IYX8 460 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 SMG8Q8ND04 991 aaKnown RBP11.98□□□□□ -0.49
CHMP3-205ENST00000409810 TMEM161BQ8NDZ6 487 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 GDPD5Q8WTR4 605 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 P2RX5Q93086 422 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 BICD1Q96G01 975 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 APOL6Q9BWW8 343 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 LMAN2LQ9H0V9 348 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 TYW1Q9NV66 732 aaKnown RBP11.98□□□□□ -0.49
CHMP3-205ENST00000409810 KBTBD4Q9NVX7 518 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 LMCD1Q9NZU5 365 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 USP25Q9UHP3 1055 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 KCNH3Q9ULD8 1083 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 TNFSF13BQ9Y275 285 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 INPP5FQ9Y2H2 1132 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 GIT1Q9Y2X7 761 aa11.98□□□□□ -0.49
CHMP3-205ENST00000409810 COL6A3P12111 3177 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 MYMKA6NI61 221 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 OFD1O75665 1012 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 LINC00271P0C7V0 271 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 IDEP14735 1019 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 POU3F3P20264 500 aaPredicted RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 ALCAMQ13740 583 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 ZNF568Q3ZCX4 644 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 LONRF3Q496Y0 759 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 NT5DC1Q5TFE4 455 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 ZPBP2Q6X784 338 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 AGMOQ6ZNB7 445 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 SPRED2Q7Z698 418 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 CDR2LQ86X02 465 aaPredicted RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 CCDC65Q8IXS2 484 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 COLGALT1Q8NBJ5 622 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 MAFAQ8NHW3 353 aaPredicted RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 CCDC34Q96HJ3 373 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 ZNF558Q96NG5 402 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 FAM193BQ96PV7 902 aaPredicted RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 RPS6KC1Q96S38 1066 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 ACO2Q99798 780 aaKnown RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 NXF3Q9H4D5 531 aaKnown RBP11.97□□□□□ -0.49
CHMP3-205ENST00000409810 CWH43Q9H720 699 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 PARP2Q9UGN5 583 aa11.97□□□□□ -0.49
CHMP3-205ENST00000409810 MYO7AQ13402 2215 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 ATG2AQ2TAZ0 1938 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 PDCD11Q14690 1871 aaKnown RBP11.96□□□□□ -0.49
CHMP3-205ENST00000409810 A0A1W2PQ27 194 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 A0A1W2PQ64 194 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 A0A1W2PQD8 194 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 GOLGA6L4A6NEF3 574 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 RFXAPO00287 272 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 INPPL1O15357 1258 aa11.96□□□□□ -0.49
CHMP3-205ENST00000409810 LPXNO60711 386 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms