RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 RNF220Q5VTB9 566 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 NAF1Q96HR8 494 aaKnown RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 KDM4CQ9H3R0 1056 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 ALG13Q9NP73 1137 aaKnown RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 CEP72Q9P209 647 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 DDX60LQ5H9U9 1706 aaKnown RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 MEIS2O14770 477 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 ATMINO43313 823 aaPredicted RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 RTN2O75298 545 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 PDE6CP51160 858 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 NCALDP61601 193 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 APBB1IPQ7Z5R6 666 aaPredicted RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 DDX50Q9BQ39 737 aaKnown RBP13.91□□□□□ -0.18
PTPRN-202ENST00000409251 RAB17Q9H0T7 212 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 DEFB129Q9H1M3 183 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 NYAP2Q9P242 653 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 DCTN4Q9UJW0 460 aa13.91□□□□□ -0.18
PTPRN-202ENST00000409251 CETN3O15182 167 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 SNHG28P0DPA3 235 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 CALCOCO2Q13137 446 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 SEMA3FQ13275 785 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 RASIP1Q5U651 963 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 GPBP1Q86WP2 473 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 FAM151AQ8WW52 585 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 PNMA5Q96PV4 448 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 TGS1Q96RS0 853 aaKnown RBP13.9□□□□□ -0.18
PTPRN-202ENST00000409251 RPS6KC1Q96S38 1066 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 CNOT10Q9H9A5 744 aaKnown RBP13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ERVK-5Q9HDB9 667 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ZFATQ9P243 1243 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 USP15Q9Y4E8 981 aaPredicted RBP13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ABCB11O95342 1321 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 PYGLP06737 847 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 EIF2AK2P19525 551 aaKnown RBP13.9□□□□□ -0.18
PTPRN-202ENST00000409251 USP11P51784 963 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 SETDB1Q15047 1291 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 MIS18BP1Q6P0N0 1132 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ELMO3Q96BJ8 720 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ECM29Q5VYK3 1845 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ENTPD5O75356 428 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 TATDN1Q6P1N9 297 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 TLDC1Q6P9B6 456 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ARMC9Q7Z3E5 817 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 TRIM7Q9C029 511 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 PICK1Q9NRD5 415 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 ETAA1Q9NY74 926 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 CCPG1Q9ULG6 757 aa13.9□□□□□ -0.18
PTPRN-202ENST00000409251 POC1B-GALNT4F8VUJ3 575 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NFIBO00712 420 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SPOPO43791 374 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 DNAJC8O75937 253 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ZCCHC18P0CG32 403 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 BRAFP15056 766 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 GBP1P32455 592 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 COPS2P61201 443 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 GALNT17Q6IS24 598 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 LRIG3Q6UXM1 1119 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 WNK4Q96J92 1243 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RMDN2Q96LZ7 410 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 WRNIP1Q96S55 665 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 CYTH2Q99418 400 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 FAM114A2Q9NRY5 505 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 HOMER3Q9NSC5 361 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NKIRAS1Q9NYS0 192 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NKX1-2Q9UD57 310 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ARMCX3Q9UH62 379 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 PPP1R9AQ9ULJ8 1098 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 COL11A2P13942 1736 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 KIAA1551Q9HCM1 1747 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 A0A1W2PQJ5 194 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 TMEM150BA6NC51 233 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 CCDC160A6NGH7 325 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 H0YGN5 161 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 MED24O75448 989 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 UBTFL6P0CB48 400 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ATP4AP20648 1035 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 PRELPP51888 382 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 GALCP54803 685 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SLC8A3P57103 927 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ITIH3Q06033 890 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 DNAJC3Q13217 504 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SEPT7Q16181 437 aaKnown RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RNF25Q96BH1 459 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 BLOC1S4Q9NUP1 217 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RASAL2Q9UJF2 1139 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NAGPAQ9UK23 515 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NFS1Q9Y697 457 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 NAV1Q8NEY1 1877 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 BRCA2P51587 3418 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 DNAH12Q6ZR08 3092 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RSPH10B2B2RC85 870 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 CBX6O95503 412 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 RSPH10BP0C881 870 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 ECHS1P30084 290 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 PAPOLAP51003 745 aaKnown RBP13.89□□□□□ -0.19
PTPRN-202ENST00000409251 COASYQ13057 564 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 TAOK1Q7L7X3 1001 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 SPATA21Q7Z572 469 aa13.89□□□□□ -0.19
PTPRN-202ENST00000409251 CD302Q8IX05 232 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms