RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 GET4Q7L5D6 327 aaPredicted RBP13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ZNF410Q86VK4 478 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 PALB2Q86YC2 1186 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RSPH1Q8WYR4 309 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CCDC136Q96JN2 1154 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NLRP4Q96MN2 994 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 HINFPQ9BQA5 517 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RSAD1Q9HA92 442 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CHST7Q9NS84 486 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 LAMA1P25391 3075 aa13.37□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SHISA7A6NL88 538 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GAS7O60861 476 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GLUD1P00367 558 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 URODP06132 367 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SKIP12755 728 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RAB27AP51159 221 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NPEPPSP55786 919 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 DSG1Q02413 1049 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 DSC1Q08554 894 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 XKR3Q5GH77 459 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 LRCH2Q5VUJ6 765 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SYNE3Q6ZMZ3 975 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RIT2Q99578 217 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 DDX23Q9BUQ8 820 aaKnown RBP13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 EIF2AQ9BY44 585 aaKnown RBP13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GPR62Q9BZJ7 368 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 WRAP73Q9P2S5 460 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CACNG4Q9UBN1 327 aa13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TDRD15B5MCY1 1934 aaKnown RBP13.36□□□□□ -0.27
SPTLC1P3-201ENST00000403408 DDX11L8A8MPP1 907 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 EML1O00423 815 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GAS2O43903 313 aaKnown RBP13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TDP2O95551 362 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ADH1AP07327 375 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NCLP19338 710 aaKnown RBP13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RFX1P22670 979 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 OR1G1P47890 313 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GLUD2P49448 558 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 JAK3P52333 1124 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SNW1Q13573 536 aaKnown RBP13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NTRK3Q16288 839 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 VARS2Q5ST30 1063 aaKnown RBP13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CYP26C1Q6V0L0 522 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 DHX32Q7L7V1 743 aaKnown RBP13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GLYCTKQ8IVS8 523 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GSTCDQ8NEC7 633 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 URGCPQ8TCY9 931 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 RABGGTAQ92696 567 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NELL1Q92832 810 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 PHKBQ93100 1093 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 NXPE3Q969Y0 559 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ZFP42Q96MM3 310 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 GAD1Q99259 594 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 PRKD2Q9BZL6 878 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 PARD6AQ9NPB6 346 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TCEAL9Q9UHQ7 104 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 HES2Q9Y543 173 aa13.35□□□□□ -0.27
SPTLC1P3-201ENST00000403408 FAM208BQ5VWN6 2430 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SPEGQ15772 3267 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ANKRD11Q6UB99 2663 aaPredicted RBP13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CARNS1A5YM72 827 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 CD72P21854 359 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SFNP31947 248 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SCNN1GP51170 649 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ZC3H14Q6PJT7 736 aaKnown RBP13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TSSK4Q6SA08 328 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 MIER3Q7Z3K6 550 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 SKAP1Q86WV1 359 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ETNPPLQ8TBG4 499 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 STAMQ92783 540 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TMEM143Q96AN5 459 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 TEKT3Q9BXF9 490 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 C6orf50Q9HD87 102 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 ANO2Q9NQ90 1003 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 VPS54Q9P1Q0 977 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 COL4A3BPQ9Y5P4 624 aa13.34□□□□□ -0.27
SPTLC1P3-201ENST00000403408 VWA8A3KMH1 1905 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 DCDC2BA2VCK2 349 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 ARL5CA6NH57 179 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 PRPF3O43395 683 aaKnown RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 KINO60870 393 aaKnown RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 SRGAP2CP0DJJ0 459 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 MLH1P40692 756 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 CDC42EP1Q00587 391 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 FZD5Q13467 585 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 NONOQ15233 471 aaKnown RBP eCLIP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 ZNF528Q3MIS6 628 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 Q4G0T1 1027 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 GRASPQ7Z6J2 395 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 ZBTB44Q8NCP5 570 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 ITFG1Q8TB96 612 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 HDAC7Q8WUI4 952 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 PRPF31Q8WWY3 499 aaKnown RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 MBOAT7Q96N66 472 aa13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 FAM193BQ96PV7 902 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 INO80BQ9C086 356 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 BMP2KQ9NSY1 1161 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.33□□□□□ -0.28
SPTLC1P3-201ENST00000403408 IPPQ9Y573 584 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms