RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ABLIM1O14639 778 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 EIF3DO15371 548 aaKnown RBP eCLIP17.49■□□□□ 0.393e-11■□□□□ 8.3
HMGA1-204ENST00000401473 FGBP02675 491 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 CD44P16070 742 aaKnown RBP17.49■□□□□ 0.39
HMGA1-204ENST00000401473 BMP8BP34820 402 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 UBXN11Q5T124 520 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 ATF7IP2Q5U623 682 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 APBB2Q92870 758 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 PDZD7Q9H5P4 517 aa17.49■□□□□ 0.39
HMGA1-204ENST00000401473 TGFB1I1O43294 461 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 PIGRP01833 764 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ZSCAN20P17040 1043 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 PROZP22891 400 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ADSSP30520 456 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 AXLP30530 894 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 NCBP1Q09161 790 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ALCAMQ13740 583 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 IKBKEQ14164 716 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 BMT2Q1RMZ1 405 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 PRPF38BQ5VTL8 546 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.48■□□□□ 0.397e-31■■■■■ 70.4
HMGA1-204ENST00000401473 HVCN1Q96D96 273 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ACCSQ96QU6 501 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 FTHL17Q9BXU8 183 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 EIF2AQ9BY44 585 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 TSPYL2Q9H2G4 693 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 RGS18Q9NS28 235 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 TNFSF13BQ9Y275 285 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ZMYM2Q9UBW7 1377 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 HNRNPDLO14979 420 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ABCD1P33897 745 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 KNOP1Q1ED39 458 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 TWF2Q6IBS0 349 aaKnown RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 NOTUMQ6P988 496 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 ZPBP2Q6X784 338 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 MYOCDQ8IZQ8 938 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 KCTD10Q9H3F6 313 aa17.48■□□□□ 0.39
HMGA1-204ENST00000401473 COLQQ9Y215 455 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-204ENST00000401473 PPP1R3GB7ZBB8 358 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 C9IYK1 514 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 TOM1L1O75674 476 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 PSRC1Q6PGN9 363 aaPredicted RBP17.47■□□□□ 0.39
HMGA1-204ENST00000401473 STXBP4Q6ZWJ1 553 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 CRIPAKQ8N1N5 446 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 GUF1Q8N442 669 aaKnown RBP17.47■□□□□ 0.39
HMGA1-204ENST00000401473 TRIML1Q8N9V2 468 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 BICD1Q96G01 975 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 TRAIPQ9BWF2 469 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 TMEM206Q9H813 350 aa17.47■□□□□ 0.39
HMGA1-204ENST00000401473 TRIP11Q15643 1979 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 A0A0U1RQF3 1178 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 ABHD14A-ACY1A0A1B0GW23 586 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 LIG4P49917 911 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 FAM189BP81408 668 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 COBLL1Q53SF7 1204 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 RASIP1Q5U651 963 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 SLC27A1Q6PCB7 646 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 SLC24A5Q71RS6 500 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 SYCP3Q8IZU3 236 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 ADSSL1Q8N142 457 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 HERVK_113Q902F9 699 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 SEMA6BQ9H3T3 888 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 HES2Q9Y543 173 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 STYXL1Q9Y6J8 313 aa17.46■□□□□ 0.39
HMGA1-204ENST00000401473 CLDN3O15551 220 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 TMEM132AQ24JP5 1023 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 TMCO2Q7Z6W1 182 aaPredicted RBP17.46■□□□□ 0.38
HMGA1-204ENST00000401473 ZBTB33Q86T24 672 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 CEP120Q8N960 986 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 ZSWIM2Q8NEG5 633 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 TCHPQ9BT92 498 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 GBP3Q9H0R5 595 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 FAM105AQ9NUU6 356 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 ANKFY1Q9P2R3 1169 aa17.46■□□□□ 0.38
HMGA1-204ENST00000401473 MEIS3P2A8K0S8 358 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 ATF7P17544 494 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-204ENST00000401473 PMS1P54277 932 aaKnown RBP17.45■□□□□ 0.38
HMGA1-204ENST00000401473 WDR5P61964 334 aaKnown RBP17.45■□□□□ 0.38
HMGA1-204ENST00000401473 DEFB103AP81534 67 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 DPCR1Q3MIW9 517 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 MPZL3Q6UWV2 235 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 SMG8Q8ND04 991 aaKnown RBP17.45■□□□□ 0.38
HMGA1-204ENST00000401473 SYAP1Q96A49 352 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-204ENST00000401473 CDT1Q9H211 546 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 RNF39Q9H2S5 420 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 EXOC7Q9UPT5 735 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 PCDHB2Q9Y5E7 798 aa17.45■□□□□ 0.38
HMGA1-204ENST00000401473 PTPRSQ13332 1948 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 A0A0B4J269 797 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 N4BP3O15049 544 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 CLIC2O15247 247 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 ZNF623O75123 536 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 NPTXRO95502 500 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 MCL1Q07820 350 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 SEZ6Q53EL9 994 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 TMEM192Q8IY95 271 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 TDHQ8IZJ6 230 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 CBWD1Q9BRT8 395 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 AGPAT3Q9NRZ7 376 aa17.44■□□□□ 0.38
HMGA1-204ENST00000401473 UBE4BO95155 1302 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms