RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RAD54LQ92698 747 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 TGS1Q96RS0 853 aaKnown RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 USB1Q9BQ65 265 aaKnown RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 KBTBD4Q9NVX7 518 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 FAM13BQ9NYF5 915 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 DNM3Q9UQ16 869 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 HCN4Q9Y3Q4 1203 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 A0A1B0GVL5 298 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 E9PMD0 336 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 MAGEB2O15479 319 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 POLR2DO15514 142 aaKnown RBP10.19□□□□□ -0.78
VPS53-203ENST00000401468 GAS2O43903 313 aaKnown RBP10.19□□□□□ -0.78
VPS53-203ENST00000401468 MGEA5O60502 916 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 VTNP04004 478 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 SLFN14P0C7P3 912 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 GUCY2CP25092 1073 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 KLRC1P26715 233 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 MCM4P33991 863 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 CTNNB1P35222 781 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 GTF2F1P35269 517 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS53-203ENST00000401468 RFC5P40937 340 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 ERVK-21P61565 698 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 FAM160A1Q05DH4 1040 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 CLUL1Q15846 466 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 EPC2Q52LR7 807 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 ARSHQ5FYA8 562 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 RRAGBQ5VZM2 374 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 PLA2G4FQ68DD2 849 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 RINT1Q6NUQ1 792 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 MTHFD1LQ6UB35 978 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 C1orf186Q6ZWK4 172 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 RTN4RL1Q86UN2 441 aaPredicted RBP10.19□□□□□ -0.78
VPS53-203ENST00000401468 FSIP1Q8NA03 581 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 IQUBQ8NA54 791 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 PIGOQ8TEQ8 1089 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 KCNN1Q92952 543 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 TIGD1Q96MW7 591 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 UHRF1Q96T88 793 aaPredicted RBP10.19□□□□□ -0.78
VPS53-203ENST00000401468 TIPINQ9BVW5 301 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 BHMT2Q9H2M3 363 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 TNMDQ9H2S6 317 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 INSL6Q9Y581 213 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 PCDHGC5Q9Y5F6 944 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 PCDHA2Q9Y5H9 948 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 C2orf16Q68DN1 1984 aa10.19□□□□□ -0.78
VPS53-203ENST00000401468 DOCK6Q96HP0 2047 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 SMIM35A0A1B0GVV1 85 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 H3BQ06 376 aaPredicted RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 ENPP3O14638 875 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CAND2O75155 1236 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 PRPF40AO75400 957 aaKnown RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 CSDE1O75534 798 aaKnown RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 ZNF202O95125 648 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 RPLP2P05387 115 aaKnown RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 PLA2G4BP0C869 781 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 BMP1P13497 986 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CYP11B2P19099 503 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 FGFR4P22455 802 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 STAT6P42226 847 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 SYKP43405 635 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 MMP16P51512 607 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CLCN3P51790 818 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 NPEPPSP55786 919 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 HTRA4P83105 476 aaPredicted RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 NFX1Q12986 1120 aaKnown RBP10.18□□□□□ -0.78
VPS53-203ENST00000401468 GPM6BQ13491 265 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 KIZQ2M2Z5 673 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 LONRF3Q496Y0 759 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 FAM26DQ5JW98 314 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 TMEM192Q8IY95 271 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CYP4X1Q8N118 509 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 LRRC71Q8N4P6 559 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 METTL13Q8N6R0 699 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 TMEM40Q8WWA1 233 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 TOP1MTQ969P6 601 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CDK5RAP3Q96JB5 506 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 CEP170P1Q96L14 293 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 OSMRQ99650 979 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 C1QTNF1Q9BXJ1 281 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 TMX1Q9H3N1 280 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 XPNPEP1Q9NQW7 623 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 TRPV2Q9Y5S1 764 aa10.18□□□□□ -0.78
VPS53-203ENST00000401468 PLXNA3P51805 1871 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 FRMD3A2A2Y4 597 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 GOLGA6L4A6NEF3 574 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 GOLGA6L22H0YM25 854 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 GRM6O15303 877 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 PARNO95453 639 aaKnown RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 MYL1P05976 194 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 LIG1P18858 919 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 KCNA5P22460 613 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 ZNF131P52739 623 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 POU5F1BQ06416 359 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 TBC1D8BQ0IIM8 1120 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 MAPK7Q13164 816 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 MCM6Q14566 821 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 EMC2Q15006 297 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 MTERF2Q49AM1 385 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 XKR9Q5GH70 373 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 TCEAL5Q5H9L2 206 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms