RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 KLRC2P26717 231 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 CLCN4P51793 760 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 GPR149Q86SP6 731 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 FERMT3Q86UX7 667 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 TCP11Q8WWU5 503 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 ATOH1Q92858 354 aaPredicted RBP31.74■■■□□ 2.67
HMGB1-205ENST00000399494 DYDC2Q96IM9 177 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 EMILIN2Q9BXX0 1053 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 BMP2KQ9NSY1 1161 aaPredicted RBP31.74■■■□□ 2.67
HMGB1-205ENST00000399494 GAS2O43903 313 aaKnown RBP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 SSBP05455 408 aaKnown RBP eCLIP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 NCLP19338 710 aaKnown RBP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 SPIRE1Q08AE8 756 aa31.73■■■□□ 2.67
HMGB1-205ENST00000399494 RNF149Q8NC42 400 aa31.73■■■□□ 2.67
HMGB1-205ENST00000399494 SMG8Q8ND04 991 aaKnown RBP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 FAM193BQ96PV7 902 aaPredicted RBP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 NAP1L4Q99733 375 aaKnown RBP31.73■■■□□ 2.67
HMGB1-205ENST00000399494 SFXN1Q9H9B4 322 aa31.73■■■□□ 2.67
HMGB1-205ENST00000399494 H0Y858 1186 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 GALR2O43603 387 aaPredicted RBP31.72■■■□□ 2.67
HMGB1-205ENST00000399494 POMCP01189 267 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 GNL2Q13823 731 aaKnown RBP31.72■■■□□ 2.67
HMGB1-205ENST00000399494 EMC2Q15006 297 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 XKR9Q5GH70 373 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 EARS2Q5JPH6 523 aaKnown RBP31.72■■■□□ 2.67
HMGB1-205ENST00000399494 POTEDQ86YR6 584 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 TNFRSF25Q93038 417 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 ZSWIM4Q9H7M6 989 aa31.72■■■□□ 2.67
HMGB1-205ENST00000399494 FAM205CA6NFA0 338 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 MARCH6O60337 910 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 CTTNQ14247 550 aaKnown RBP31.71■■■□□ 2.67
HMGB1-205ENST00000399494 NCAPH2Q6IBW4 605 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 TMEM105Q8N8V8 129 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 CNNM3Q8NE01 707 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 FBXO18Q8NFZ0 1043 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 UBN1Q9NPG3 1134 aa31.71■■■□□ 2.67
HMGB1-205ENST00000399494 MRPL17Q9NRX2 175 aaKnown RBP31.71■■■□□ 2.67
HMGB1-205ENST00000399494 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.71■■■□□ 2.67
HMGB1-205ENST00000399494 SLITRK3O94933 977 aa31.7■■■□□ 2.67
HMGB1-205ENST00000399494 RNF39Q9H2S5 420 aa31.7■■■□□ 2.67
HMGB1-205ENST00000399494 SOD2P04179 222 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 ITGA4P13612 1032 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 PTENP60484 403 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 TAS1R1Q7RTX1 841 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 COLGALT2Q8IYK4 626 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 ACSF2Q96CM8 615 aaPredicted RBP31.69■■■□□ 2.66
HMGB1-205ENST00000399494 EIF2AQ9BY44 585 aaKnown RBP31.69■■■□□ 2.66
HMGB1-205ENST00000399494 XPNPEP1Q9NQW7 623 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 SMC3Q9UQE7 1217 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 IPPQ9Y573 584 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 CACNA1HO95180 2353 aa31.69■■■□□ 2.66
HMGB1-205ENST00000399494 INPPL1O15357 1258 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 BAG4O95429 457 aaKnown RBP31.68■■■□□ 2.66
HMGB1-205ENST00000399494 GJB2P29033 226 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 CYP4A11Q02928 519 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 PCBP1Q15365 356 aaKnown RBP eCLIP31.68■■■□□ 2.66
HMGB1-205ENST00000399494 ASTLQ6HA08 431 aaPredicted RBP31.68■■■□□ 2.66
HMGB1-205ENST00000399494 TPH2Q8IWU9 490 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 SLFN12Q8IYM2 578 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 MTRQ99707 1265 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 MARCH5Q9NX47 278 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 MIOSQ9NXC5 875 aa31.68■■■□□ 2.66
HMGB1-205ENST00000399494 SPDYE4A6NLX3 237 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 GFRA3O60609 400 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 TSPAN1O60635 241 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 ERLIN2O94905 339 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 EFEMP2O95967 443 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 AXLP30530 894 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 MXD4Q14582 209 aaPredicted RBP31.67■■■□□ 2.66
HMGB1-205ENST00000399494 C15orf39Q6ZRI6 1047 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 CCDC149Q6ZUS6 474 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 OTOP3Q7RTS5 596 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 DENND4AQ7Z401 1863 aa31.67■■■□□ 2.66
HMGB1-205ENST00000399494 ARL5CA6NH57 179 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 C2CD2LO14523 706 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 POU5F1BQ06416 359 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 IFNLR1Q8IU57 520 aaPredicted RBP31.66■■■□□ 2.66
HMGB1-205ENST00000399494 CPB2Q96IY4 423 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 RPS6KC1Q96S38 1066 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 GAD1Q99259 594 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 HSD17B14Q9BPX1 270 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 HERC2P3Q9BVR0 1158 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 FOXP1Q9H334 677 aaPredicted RBP31.66■■■□□ 2.66
HMGB1-205ENST00000399494 SSX2IPQ9Y2D8 614 aa31.66■■■□□ 2.66
HMGB1-205ENST00000399494 PRG3Q9Y2Y8 225 aaPredicted RBP31.66■■■□□ 2.66
HMGB1-205ENST00000399494 ZFHX2Q9C0A1 2572 aaPredicted RBP31.66■■■□□ 2.66
HMGB1-205ENST00000399494 PROB1E7EW31 1015 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 OR1G1P47890 313 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 CLCN5P51795 746 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 DSC1Q08554 894 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 KIAA0319Q5VV43 1072 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 NOTUMQ6P988 496 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 RNF168Q8IYW5 571 aaPredicted RBP31.65■■■□□ 2.66
HMGB1-205ENST00000399494 EIF2AK1Q9BQI3 630 aaKnown RBP31.65■■■□□ 2.66
HMGB1-205ENST00000399494 CSRNP2Q9H175 543 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 HES2Q9Y543 173 aa31.65■■■□□ 2.66
HMGB1-205ENST00000399494 LYPLA2O95372 231 aa31.64■■■□□ 2.66
HMGB1-205ENST00000399494 URODP06132 367 aa31.64■■■□□ 2.66
HMGB1-205ENST00000399494 CMASQ8NFW8 434 aaPredicted RBP31.64■■■□□ 2.66
HMGB1-205ENST00000399494 CCDC51Q96ER9 411 aa31.64■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms