RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TFCP2L1Q9NZI6 479 aa9.92□□□□□ -0.82
COL28A1-201ENST00000399429 BTBD7Q9P203 1132 aa9.92□□□□□ -0.82
COL28A1-201ENST00000399429 SLC12A4Q9UP95 1085 aa9.92□□□□□ -0.82
COL28A1-201ENST00000399429 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.92□□□□□ -0.82
COL28A1-201ENST00000399429 UTYO14607 1347 aa9.92□□□□□ -0.82
COL28A1-201ENST00000399429 NPTXRO95502 500 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PSMC2P35998 433 aaKnown RBP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 LIN9Q5TKA1 542 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 IZUMO3Q5VZ72 239 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 USP17L2Q6R6M4 530 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PPP4R1Q8TF05 950 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 L3MBTL3Q96JM7 780 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 RMDN2Q96LZ7 410 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 IWS1Q96ST2 819 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 RBM15Q96T37 977 aaKnown RBP eCLIP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 TSSK1BQ9BXA7 367 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 ADGRB1O14514 1584 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 USP17L3A6NCW0 530 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 USP17L4A6NCW7 530 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PGM3O95394 542 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 LDHCP07864 332 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 ITGA8P53708 1063 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 USP46P62068 366 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 GPC5P78333 572 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 HIC1Q14526 733 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PRR16Q569H4 304 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 KLC3Q6P597 504 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 USP17L1Q7RTZ2 530 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 MAPKAPK5Q8IW41 473 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 DNAJC10Q8IXB1 793 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 KBTBD4Q9NVX7 518 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PKD2L1Q9P0L9 805 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 WDR35Q9P2L0 1181 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 ZC3H4Q9UPT8 1303 aaKnown RBP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 C5orf60A6NFR6 353 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 WNT7AO00755 349 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 RPL21P46778 160 aaKnown RBP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 AUHQ13825 339 aaKnown RBP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 TTBK2Q6IQ55 1244 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 IYDQ6PHW0 289 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 EXOC3L1Q86VI1 746 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 RAD54LQ92698 747 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PIGSQ96S52 555 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 PREBQ9HCU5 417 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 NIP7Q9Y221 180 aaKnown RBP eCLIP9.91□□□□□ -0.82
COL28A1-201ENST00000399429 ADGRB3O60242 1522 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 KIAA1210Q9ULL0 1709 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 ROBO2Q9HCK4 1378 aa9.91□□□□□ -0.82
COL28A1-201ENST00000399429 FOXO6A8MYZ6 492 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 NOP56O00567 594 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 PTENP60484 403 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 DYNLT1P63172 113 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 MTHFD1LQ6UB35 978 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 FAM178BQ8IXR5 827 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 C1orf131Q8NDD1 294 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 THAP11Q96EK4 314 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 LZTS2Q9BRK4 669 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 ANKRD2Q9GZV1 360 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 DNAAF2Q9NVR5 837 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 RAB20Q9NX57 234 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 NKX1-2Q9UD57 310 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 BCAP29Q9UHQ4 241 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 ZMYND8Q9ULU4 1186 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 PPRC1Q5VV67 1664 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 PTPRMP28827 1452 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 CLPTM1O96005 669 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 RCAN1P53805 252 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 IGBP1P78318 339 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 NXNQ6DKJ4 435 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 CASC4Q6P4E1 433 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 CENPUQ71F23 418 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 ANKMY2Q8IV38 441 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 TGFBRAP1Q8WUH2 860 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 SYN2Q92777 582 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 SHCBP1LQ9BZQ2 653 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 PCIF1Q9H4Z3 704 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 SLCO1B3Q9NPD5 702 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 ANAPC7Q9UJX3 599 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 NAALADL1Q9UQQ1 740 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 A0A1B0GVG6 124 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 XPO1O14980 1071 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 GH1P01241 217 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 FECHP22830 423 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 CCNFP41002 786 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 MRPS9P82933 396 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 TBC1D10BQ4KMP7 808 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 MIIPQ5JXC2 388 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 CRLF3Q8IUI8 442 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 DYNLL2Q96FJ2 89 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 PURBQ96QR8 312 aaKnown RBP9.9□□□□□ -0.82
COL28A1-201ENST00000399429 TMEM260Q9NX78 707 aa9.9□□□□□ -0.82
COL28A1-201ENST00000399429 LPXNO60711 386 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 CYP2D6P10635 497 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 COMTP21964 271 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 ATXN3P54252 364 aaPredicted RBP9.9□□□□□ -0.83
COL28A1-201ENST00000399429 PSMC1P62191 440 aaKnown RBP9.9□□□□□ -0.83
COL28A1-201ENST00000399429 LBRQ14739 615 aaKnown RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms