RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 HSPA1AP0DMV8 641 aaKnown RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 HSPA1BP0DMV9 641 aaKnown RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 PEX3P56589 373 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 ERVK-9P63128 1117 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 KIF22Q14807 665 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 SLFN11Q7Z7L1 901 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 GPRC5AQ8NFJ5 357 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 U2AF1L4Q8WU68 220 aaKnown RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 RBM12Q9NTZ6 932 aaKnown RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 MORF4L1Q9UBU8 362 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 NCANO14594 1321 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 EMSYQ7Z589 1322 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 GPR25O00155 361 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 TMEM253P0C7T8 217 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 CYP2C19P33261 490 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 FAM110CQ1W6H9 321 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 RDH13Q8NBN7 331 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 LNX1Q8TBB1 728 aaPredicted RBP23.33■■□□□ 1.33
TRIM54-202ENST00000380075 SPIRE2Q8WWL2 714 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 EXOC4Q96A65 974 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 CALR3Q96L12 384 aaKnown RBP23.33■■□□□ 1.33
TRIM54-202ENST00000380075 CBWD1Q9BRT8 395 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 SELENOOQ9BVL4 669 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 TEX13BQ9BXU2 312 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 PSD3Q9NYI0 1048 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 HPCAL4Q9UM19 191 aa23.33■■□□□ 1.33
TRIM54-202ENST00000380075 ECM2O94769 699 aaPredicted RBP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 ABCD1P33897 745 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 DMP1Q13316 513 aaPredicted RBP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 EPC2Q52LR7 807 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 FAM102BQ5T8I3 360 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 MAP4K3Q8IVH8 894 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 PCIF1Q9H4Z3 704 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 ACAD9Q9H845 621 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 DMGDHQ9UI17 866 aaKnown RBP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 SLC16A4O15374 487 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 ZMYND10O75800 440 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 MATR3P43243 847 aaKnown RBP eCLIP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 EPHB4P54760 987 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 EMBQ6PCB8 327 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 OLIG1Q8TAK6 271 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 MS4A14Q96JA4 679 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 NTPCRQ9BSD7 190 aaKnown RBP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 EHD2Q9NZN4 543 aa23.32■■□□□ 1.32
TRIM54-202ENST00000380075 SUCLA2Q9P2R7 463 aaPredicted RBP23.32■■□□□ 1.32
TRIM54-202ENST00000380075 PSAPP07602 524 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 KCNA2P16389 499 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 RTP1P59025 263 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 TNNC1P63316 161 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 ENPEPQ07075 957 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 PHLDB3Q6NSJ2 640 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 TMEM161BQ8NDZ6 487 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 RFFLQ8WZ73 363 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 SPATC1LQ9H0A9 340 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 SMARCAL1Q9NZC9 954 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.31■■□□□ 1.32
TRIM54-202ENST00000380075 PRDM4Q9UKN5 801 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 TBX20Q9UMR3 447 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 CLSTN1O94985 981 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 MYBL2P10244 700 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 GALCP54803 685 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 SP3Q02447 781 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 GNPTABQ3T906 1256 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 ANO5Q75V66 913 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 GLYCTKQ8IVS8 523 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 IFT20Q8IY31 132 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 USP38Q8NB14 1042 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 ACTRT1Q8TDG2 376 aa23.31■■□□□ 1.32
TRIM54-202ENST00000380075 TNFAIP3P21580 790 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 NNTQ13423 1086 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 PLA2G4FQ68DD2 849 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 MCPH1Q8NEM0 835 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 HDAC7Q8WUI4 952 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 ZNF296Q8WUU4 475 aaPredicted RBP23.3■■□□□ 1.32
TRIM54-202ENST00000380075 CTNNBL1Q8WYA6 563 aaPredicted RBP23.3■■□□□ 1.32
TRIM54-202ENST00000380075 PORCNQ9H237 461 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 GPRC5CQ9NQ84 441 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 CYP39A1Q9NYL5 469 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 KCNG1Q9UIX4 513 aa23.3■■□□□ 1.32
TRIM54-202ENST00000380075 KCNK3O14649 394 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 NPTX2P47972 431 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 MXI1P50539 228 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 DLG4P78352 724 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 PPP3CAQ08209 521 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 PEX26Q7Z412 305 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 USP37Q86T82 979 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 KMT5AQ9NQR1 393 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 GABBR1Q9UBS5 961 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 TMEM59LQ9UK28 342 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 ADAM21Q9UKJ8 722 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 TMEM150BA6NC51 233 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 CCDC169A6NNP5 214 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 H0YCG3 227 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 DGAT1O75907 488 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 ARHGAP44Q17R89 818 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 C1orf220Q5T0J3 134 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 CAVIN3Q969G5 261 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 CEP170P1Q96L14 293 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 JPH1Q9HDC5 661 aaPredicted RBP23.29■■□□□ 1.32
TRIM54-202ENST00000380075 UBE2TQ9NPD8 197 aaPredicted RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms