RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 PGRMC1O00264 195 aaKnown RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 SNX3O60493 162 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 CTSWP56202 376 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 LETM2Q2VYF4 491 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 EMC10Q5UCC4 262 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 PCNX4Q63HM2 1172 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 RGS9BPQ6ZS82 235 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 CCDC125Q86Z20 511 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 DUSP9Q99956 384 aaKnown RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 BLZF1Q9H2G9 400 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 VPS37BQ9H9H4 285 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 KRT82Q9NSB4 513 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ZNF229Q9UJW7 825 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 RPL26L1Q9UNX3 145 aaKnown RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 SPO11Q9Y5K1 396 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ANKARQ7Z5J8 1434 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 GRID2IPA4D2P6 1211 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 KPNA4O00629 521 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 FBP2O00757 339 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 UNC5CO95185 931 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 IFNAR1P17181 557 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 KRT15P19012 456 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ARID5AQ03989 594 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 AP1B1Q10567 949 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 RGS21Q2M5E4 152 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 PARP6Q2NL67 630 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 DDX56Q9NY93 547 aaKnown RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ENTPD5O75356 428 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 CYP2C9P11712 490 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ST13P50502 369 aaKnown RBP12.51□□□□□ -0.41
NPHP4-202ENST00000378161 PARVGQ9HBI0 331 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 ZNF304Q9HCX3 659 aa12.51□□□□□ -0.41
NPHP4-202ENST00000378161 SALL3Q9BXA9 1300 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 CAMSAP1Q5T5Y3 1602 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 GTPBP6O43824 516 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 AMPD2Q01433 879 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 LRP8Q14114 963 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PACS1Q6VY07 963 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PEX26Q7Z412 305 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 ACMSDQ8TDX5 336 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 HSPBAP1Q96EW2 488 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 FKBP14Q9NWM8 211 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 TUBE1Q9UJT0 475 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PCDHGA3Q9Y5H0 932 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PCDHA13Q9Y5I0 950 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 CCDC188H7C350 402 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PFDN6O15212 129 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PDE8BO95263 885 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 PRLP01236 227 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 SCG2P13521 617 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 EPHB2P29323 1055 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 SKIV2L2P42285 1042 aaKnown RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 DR1Q01658 176 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 CYP4X1Q8N118 509 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 CASKIN2Q8WXE0 1202 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 ISCUQ9H1K1 167 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 MRPL46Q9H2W6 279 aaKnown RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 NRKQ7Z2Y5 1582 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 SH2B2O14492 632 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 DAB1O75553 588 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 FTCDO95954 541 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 FAM153BP0C7A2 387 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 LIFRP42702 1097 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 TUBP50607 506 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 ARFIP2P53365 341 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 KRT31Q15323 416 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 FAM153CQ494X1 144 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 METTL21CQ5VZV1 264 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 USPL1Q5W0Q7 1092 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 TMEM139Q8IV31 216 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 KSR1Q8IVT5 923 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 INPP5DQ92835 1189 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 CLIP3Q96DZ5 547 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 HNRNPABQ99729 332 aaKnown RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 RNF26Q9BY78 433 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-202ENST00000378161 MLXIPQ9HAP2 919 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 SMARCAL1Q9NZC9 954 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 FAM153AQ9UHL3 310 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 EFR3BQ9Y2G0 817 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 TNKSO95271 1327 aa12.5□□□□□ -0.41
NPHP4-202ENST00000378161 hCG_1642624A0A1W2PR95 340 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 PGM3O95394 542 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 ADD2P35612 726 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 ERFP50548 548 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 ADAM17P78536 824 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 PPP2R2DQ66LE6 453 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 TWF2Q6IBS0 349 aaKnown RBP12.49□□□□□ -0.41
NPHP4-202ENST00000378161 MREGQ8N565 214 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 TERB1Q8NA31 727 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 GOLM1Q8NBJ4 401 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 OTUD5Q96G74 571 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 ZNF333Q96JL9 665 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 MARCH7Q9H992 704 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 ZMAT5Q9UDW3 170 aaKnown RBP12.49□□□□□ -0.41
NPHP4-202ENST00000378161 SEPT3Q9UH03 358 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 TRAF5O00463 557 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 NCK2O43639 380 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 RARAP10276 462 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 PTPN4P29074 926 aa12.49□□□□□ -0.41
NPHP4-202ENST00000378161 SERPINB1P30740 379 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms