RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 RPUSD2Q8IZ73 545 aaKnown RBP12.37□□□□□ -0.43
SYNE1-204ENST00000367248 KCNB2Q92953 911 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 STMN2Q93045 179 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 SLC7A5P2Q9GIP4 190 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 SLC16A3O15427 465 aaKnown RBP12.37□□□□□ -0.43
SYNE1-204ENST00000367248 CPP00450 1065 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 STK4Q13043 487 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 FGGP02679 453 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 CASP2P42575 452 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 DGKDQ16760 1214 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 ANO4Q32M45 955 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 WDR72Q3MJ13 1102 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 MGAT5BQ3V5L5 792 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 BZW1Q7L1Q6 419 aaKnown RBP12.37□□□□□ -0.43
SYNE1-204ENST00000367248 EFCAB13Q8IY85 973 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 MCUR1Q96AQ8 359 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 RBM41Q96IZ5 413 aaKnown RBP12.37□□□□□ -0.43
SYNE1-204ENST00000367248 YME1L1Q96TA2 773 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 LCMT1Q9UIC8 334 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 PPP2R3BQ9Y5P8 575 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 NEURL4Q96JN8 1562 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 POC1B-GALNT4F8VUJ3 575 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 ZRANB2O95218 330 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE1-204ENST00000367248 PDGFRBP09619 1106 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 ASNSD1Q9NWL6 643 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 HSPBP1Q9NZL4 362 aa12.37□□□□□ -0.43
SYNE1-204ENST00000367248 PDHXO00330 501 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 ASAP2O43150 1006 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 PLS3P13797 630 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 PMLP29590 882 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 SPATA2LQ8IUW3 424 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 RDM1Q8NG50 284 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 HPS3Q969F9 1004 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 RMDN2Q96LZ7 410 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 MYMKA6NI61 221 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 BBS9Q3SYG4 887 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 STARD7Q9NQZ5 370 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 ANO9A1A5B4 782 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 CCDC188H7C350 402 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 DNAJB2P25686 324 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 DHX9Q08211 1270 aaKnown RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 FAM83AQ86UY5 434 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 FBXO16Q8IX29 292 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 DONSONQ9NYP3 566 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 COL3A1P02461 1466 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 CYP2C8P10632 490 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 GNA15P30679 374 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 NPEPPSP55786 919 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 IQCB1Q15051 598 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 ENTPD7Q9NQZ7 604 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 KCNQ5Q9NR82 932 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 PRR23AA6NEV1 266 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 ACOT2P49753 483 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 THOC5Q13769 683 aaKnown RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 GKAP1Q5VSY0 366 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-204ENST00000367248 PDIK1LQ8N165 341 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 KLK14Q9P0G3 267 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 SRGAP2O75044 1071 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 CPT1AP50416 773 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 DPYDQ12882 1025 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 LRRC31Q6UY01 552 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 KDELC2Q7Z4H8 507 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 MED4Q9NPJ6 270 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 DYRK4Q9NR20 520 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 ERAP1Q9NZ08 941 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 TUBE1Q9UJT0 475 aa12.36□□□□□ -0.43
SYNE1-204ENST00000367248 HBP1O60381 514 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 FXR2P51116 673 aaKnown RBP eCLIP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 PSMC1P62191 440 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 EDRF1Q3B7T1 1238 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ZNF746Q6NUN9 644 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 GLB1LQ6UWU2 654 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 GMCL1Q96IK5 515 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ZNF512Q96ME7 567 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 PCSK1NQ9UHG2 260 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 PPP1R9AQ9ULJ8 1098 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 FARP1Q9Y4F1 1045 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 RAG1P15918 1043 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 EFCAB12Q6NXP0 572 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ANKEF1Q9NU02 776 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 HACD3Q9P035 362 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ZMYND10O75800 440 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 GNGT1P63211 74 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 DR1Q01658 176 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SATB1Q01826 763 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 RBBP5Q15291 538 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 PDXDC1Q6P996 788 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SH3TC2Q8TF17 1288 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ATP8A1Q9Y2Q0 1164 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 HEY1Q9Y5J3 304 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SNX9Q9Y5X1 595 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SEC23AQ15436 765 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 LIMA1Q9UHB6 759 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SALL3Q9BXA9 1300 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SART1O43290 800 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ITGA4P13612 1032 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 CALRP27797 417 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 ALDH7A1P49419 539 aaKnown RBP12.35□□□□□ -0.43
SYNE1-204ENST00000367248 GABPB1Q06547 395 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms