RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 VCAM1P19320 739 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 BYSLQ13895 437 aaKnown RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 LLGL2Q6P1M3 1020 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZDHHC24Q6UX98 284 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 TBC1D1Q86TI0 1168 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 THOC1Q96FV9 657 aaKnown RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 FIZ1Q96SL8 496 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 TEKT3Q9BXF9 490 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 TCEAL9Q9UHQ7 104 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 RASGRF2O14827 1237 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 ECM2O94769 699 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 RPSAP08865 295 aaKnown RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 CIITAP33076 1130 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 CYB5D1Q6P9G0 228 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 SEPT14Q6ZU15 432 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 MRRFQ96E11 262 aaKnown RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 HEMGNQ9BXL5 484 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 WDR11Q9BZH6 1224 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 EPB41L4BQ9H329 900 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 TUFT1Q9NNX1 390 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 TOPORSQ9NS56 1045 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 PHF2O75151 1096 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 ADRA2BP18089 450 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 SMTNP53814 917 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 SOX10P56693 466 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 TNIP1Q15025 636 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 NOP9Q86U38 636 aaKnown RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 ZKSCAN4Q969J2 545 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 AGBL1Q96MI9 1066 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 PAIP2Q9BPZ3 127 aaKnown RBP13.05□□□□□ -0.32
CLIP3-201ENST00000360535 ZSWIM1Q9BR11 485 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 PI4K2AQ9BTU6 479 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 ADAM33Q9BZ11 813 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 SAMD15Q9P1V8 674 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 CTNNAL1Q9UBT7 734 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 TRPC6Q9Y210 931 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 USP20Q9Y2K6 914 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 NCANO14594 1321 aa13.05□□□□□ -0.32
CLIP3-201ENST00000360535 MMP10P09238 476 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 MXI1P50539 228 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 EIF3BP55884 814 aaKnown RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 CALCOCO2Q13137 446 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 FAM102BQ5T8I3 360 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 EMC10Q5UCC4 262 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 CDAN1Q8IWY9 1227 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 RHOT2Q8IXI1 618 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 PARP9Q8IXQ6 854 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 FUKQ8N0W3 1084 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 DAW1Q8N136 415 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 ANKS4BQ8N8V4 417 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 ZNF564Q8TBZ8 553 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 GLIS2Q9BZE0 524 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 RPTORQ8N122 1335 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 RARAP10276 462 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 MYCLP12524 364 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 SNCBQ16143 134 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 ERMARDQ5T6L9 678 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 LMBRD2Q68DH5 695 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 YTHDF3Q7Z739 585 aaKnown RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 CBWD2Q8IUF1 395 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 KIRREL3Q8IZU9 778 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 GIMAP7Q8NHV1 300 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 FAM129AQ9BZQ8 928 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 TRIM7Q9C029 511 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 GRHL1Q9NZI5 618 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 HSPBP1Q9NZL4 362 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 LARSQ9P2J5 1176 aaKnown RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 CYP3A4P08684 503 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 HP1BP3Q5SSJ5 553 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 PLA2G4FQ68DD2 849 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 CCDC50Q8IVM0 306 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 EIF1ADQ8N9N8 165 aaKnown RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 GMCL1Q96IK5 515 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 MTUS1Q9ULD2 1270 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 AHDC1Q5TGY3 1603 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-201ENST00000360535 SYNGAP1Q96PV0 1343 aa13.04□□□□□ -0.32
CLIP3-201ENST00000360535 NPR1P16066 1061 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 DHX34Q14147 1143 aaKnown RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 TATDN1Q6P1N9 297 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 RNF207Q6ZRF8 634 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CAPN12Q6ZSI9 719 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 PRUNE1Q86TP1 453 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 C1orf131Q8NDD1 294 aaKnown RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 PLEKHO2Q8TD55 490 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 MKNK1Q9BUB5 465 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 ARHGEF10LQ9HCE6 1279 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 FAM187AA6NFU0 413 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CHUKO15111 745 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 ANXA13P27216 316 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 ALDH1B1P30837 517 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CHRNA3P32297 505 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 PTGIRP43119 386 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 PODNQ7Z5L7 613 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 IL31RAQ8NI17 732 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 GJD4Q96KN9 370 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 TAOK3Q9H2K8 898 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CNOT10Q9H9A5 744 aaKnown RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 TPX2Q9ULW0 747 aaKnown RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 FRMPD4Q14CM0 1322 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CHRNA5P30532 468 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms