RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 KDM1AO60341 852 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 SUN1O94901 812 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 FKBP9O95302 570 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 MAP2K2P36507 400 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 TMEM62Q0P6H9 643 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 FKBP9P1Q75LS8 142 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 NEK8Q86SG6 692 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 TUBGCP3Q96CW5 907 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 NDEL1Q9GZM8 345 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 ITIH6Q6UXX5 1313 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 OR52Z1P0C646 297 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 ZFXP17010 805 aaPredicted RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 TP53BP2Q13625 1128 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CAPRIN2Q6IMN6 1127 aaKnown RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 COG1Q8WTW3 980 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 INTS4Q96HW7 963 aaKnown RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 OSBPL6Q9BZF3 934 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 ECEL1O95672 775 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 SP100P23497 879 aaPredicted RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 CDC25AP30304 524 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CACUL1Q86Y37 369 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CRLF3Q8IUI8 442 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 UNC5CLQ8IV45 518 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 SLC4A9Q96Q91 983 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CAPS2Q9BXY5 557 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 PCDHB8Q9UN66 801 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 RNF123Q5XPI4 1314 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 LRRC14BA6NHZ5 514 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CCDC85CA6NKD9 419 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 CHURC1-FNTBB4DL54 471 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 GOLGA8KD6RF30 607 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 M0QYV0 167 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 TMPRSS15P98073 1019 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 RCN1Q15293 331 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 LLPHQ9BRT6 129 aaKnown RBP10.34□□□□□ -0.75
CHD3-202ENST00000358181 C17orf80Q9BSJ5 609 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 EPN3Q9H201 632 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 DYRK3O43781 588 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 ERFP50548 548 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 AP2B1P63010 937 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 BFSP2Q13515 415 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 AP1ARQ63HQ0 302 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 GRAMD1CQ8IYS0 662 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 CYP4F11Q9HBI6 524 aa10.34□□□□□ -0.75
CHD3-202ENST00000358181 SYNCRIPO60506 623 aaKnown RBP10.33□□□□□ -0.75
CHD3-202ENST00000358181 HIST1H2AGP0C0S8 130 aaPredicted RBP10.33□□□□□ -0.75
CHD3-202ENST00000358181 HIST1H2ADP20671 130 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 MAPRE1Q15691 268 aaKnown RBP10.33□□□□□ -0.75
CHD3-202ENST00000358181 SYTL1Q8IYJ3 562 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 HIST1H2AHQ96KK5 128 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 HIST1H2AJQ99878 128 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 H2AFJQ9BTM1 129 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 ATP6V1HQ9UI12 483 aa10.33□□□□□ -0.75
CHD3-202ENST00000358181 IBTKQ9P2D0 1353 aaPredicted RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 YEATS2Q9ULM3 1422 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 POTEFA5A3E0 1075 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 USP17L8P0C7I0 530 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 ARF4P18085 180 aaPredicted RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 GPC3P51654 580 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 MGAT5BQ3V5L5 792 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 SNX30Q5VWJ9 437 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 FAM133AQ8N9E0 248 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 BEST2Q8NFU1 509 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 DNAJC1Q96KC8 554 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 SLC13A1Q9BZW2 595 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 RAVER2Q9HCJ3 691 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 ERVV-2B6SEH9 535 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TNPO2O14787 897 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 DAB1O75553 588 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 LRG1P02750 347 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 NRG3P56975 720 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TWF1Q12792 350 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 PDAP1Q13442 181 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 RPAINQ86UA6 219 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 RGL4Q8IZJ4 473 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 SYNE4Q8N205 404 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 LARP4BQ92615 738 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 FAM162AQ96A26 154 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 SPASTQ9UBP0 616 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 ANGPTL2Q9UKU9 493 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 PZPP20742 1482 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 FAM196BA6NMK8 535 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 BTBD18B2RXH4 712 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 IFT88Q13099 833 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TAF13Q15543 124 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 PHACTR4Q8IZ21 702 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 DDX50Q9BQ39 737 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 BRD8Q9H0E9 1235 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 FBXO10Q9UK96 956 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 CCDC151A5D8V7 595 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TOMM70O94826 608 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TTC23Q5W5X9 447 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 FLAD1Q8NFF5 587 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 CCDC3Q9BQI4 270 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 EXOSC4Q9NPD3 245 aaKnown RBP10.33□□□□□ -0.76
CHD3-202ENST00000358181 GCNT4Q9P109 453 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 POLR1DQ9Y2S0 133 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 TMEM94Q12767 1356 aa10.33□□□□□ -0.76
CHD3-202ENST00000358181 PEX3P56589 373 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms