RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CD44P16070 742 aaKnown RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 MAGEA10P43363 369 aaPredicted RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 MLLT1Q03111 559 aaPredicted RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 IKBKEQ14164 716 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 TWF2Q6IBS0 349 aaKnown RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 ADSSL1Q8N142 457 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 ZBTB45Q96K62 511 aaPredicted RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 GBP3Q9H0R5 595 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 ZMYM2Q9UBW7 1377 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 PPP1R3GB7ZBB8 358 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 TISP43B9A030 160 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 ANKRD63C9JTQ0 380 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 TGFB1I1O43294 461 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 PROZP22891 400 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 NLRP12P59046 1061 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 EEF1DP3Q658K8 133 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 SLC27A1Q6PCB7 646 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 SASS6Q6UVJ0 657 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 FAM43BQ6ZT52 329 aaPredicted RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 ZNF365Q70YC5 407 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 LINC01599Q8WXQ3 324 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 TSPYL2Q9H2G4 693 aaPredicted RBP24.29■■□□□ 1.48
SDC3-202ENST00000339394 KCTD10Q9H3F6 313 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 RANBP2P49792 3224 aaKnown RBP24.28■■□□□ 1.48
SDC3-202ENST00000339394 ENPP3O14638 875 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 N4BP3O15049 544 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 ADSSP30520 456 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 ZSCAN23Q3MJ62 389 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 OTOP2Q7RTS6 562 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 CCDC51Q96ER9 411 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 TCHPQ9BT92 498 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 RGS18Q9NS28 235 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 ANKFY1Q9P2R3 1169 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 SCN5AQ14524 2016 aa24.28■■□□□ 1.48
SDC3-202ENST00000339394 SYCE3A1L190 88 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 ABLIM1O14639 778 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 CLDN3O15551 220 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 FGBP02675 491 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 STIM1Q13586 685 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 DPCR1Q3MIW9 517 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 TMEM240Q5SV17 173 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 UBXN11Q5T124 520 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 PSRC1Q6PGN9 363 aaPredicted RBP24.27■■□□□ 1.48
SDC3-202ENST00000339394 MLKLQ8NB16 471 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.27■■□□□ 1.48
SDC3-202ENST00000339394 TRAIPQ9BWF2 469 aa24.27■■□□□ 1.48
SDC3-202ENST00000339394 EIF2AQ9BY44 585 aaKnown RBP24.27■■□□□ 1.48
SDC3-202ENST00000339394 ABHD14A-ACY1A0A1B0GW23 586 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 ACTN1P12814 892 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 MPZL3Q6UWV2 235 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 TET1Q8NFU7 2136 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 ADPGKQ9BRR6 497 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 HAPLN2Q9GZV7 340 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 SEMA6BQ9H3T3 888 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 STYXL1Q9Y6J8 313 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 LTBP2Q14767 1821 aa24.26■■□□□ 1.47
SDC3-202ENST00000339394 A0A0U1RQF3 1178 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.25■■□□□ 1.47
SDC3-202ENST00000339394 PPP1R2P41236 205 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 MCL1Q07820 350 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 ZNF568Q3ZCX4 644 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 KLHL10Q6JEL2 608 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 SLC24A5Q71RS6 500 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 HS2ST1Q7LGA3 356 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 ZBTB33Q86T24 672 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 DHTKD1Q96HY7 919 aaPredicted RBP24.25■■□□□ 1.47
SDC3-202ENST00000339394 AGPAT3Q9NRZ7 376 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 FAM105AQ9NUU6 356 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 TYW1Q9NV66 732 aaKnown RBP24.25■■□□□ 1.47
SDC3-202ENST00000339394 A0A0B4J269 797 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 C9IYK1 514 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 PDXKO00764 312 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 PSMA7O14818 248 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 BAIAP3O94812 1187 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 NPTXRO95502 500 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 MATR3P43243 847 aaKnown RBP eCLIP24.25■■□□□ 1.47
SDC3-202ENST00000339394 SLFN12LQ6IEE8 588 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 CENPPQ6IPU0 288 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 CBWD1Q9BRT8 395 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 TRIM6Q9C030 488 aaPredicted RBP24.25■■□□□ 1.47
SDC3-202ENST00000339394 CDT1Q9H211 546 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 PCDHB2Q9Y5E7 798 aa24.25■■□□□ 1.47
SDC3-202ENST00000339394 HARSP12081 509 aaKnown RBP24.24■■□□□ 1.47
SDC3-202ENST00000339394 SNRPFP62306 86 aaKnown RBP24.24■■□□□ 1.47
SDC3-202ENST00000339394 FAM189BP81408 668 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 TYRO3Q06418 890 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 NOLC1Q14978 699 aaKnown RBP eCLIP24.24■■□□□ 1.47
SDC3-202ENST00000339394 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.24■■□□□ 1.473e-9■■■□□ 15.9
SDC3-202ENST00000339394 GOLGA5Q8TBA6 731 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 POMGNT1Q8WZA1 660 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 GDF15Q99988 308 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 GZF1Q9H116 711 aaPredicted RBP24.24■■□□□ 1.47
SDC3-202ENST00000339394 C1orf112Q9NSG2 853 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 TRAF3IP3Q9Y228 551 aa24.24■■□□□ 1.47
SDC3-202ENST00000339394 CLIC2O15247 247 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 EFCAB14O75071 495 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 MCF2P10911 925 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 GARTP22102 1010 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 PMS1P54277 932 aaKnown RBP24.23■■□□□ 1.47
SDC3-202ENST00000339394 STX1AQ16623 288 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms