RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 SNX17Q15036 470 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 TRIM71Q2Q1W2 868 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 CEP135Q66GS9 1140 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 TSHZ1Q6ZSZ6 1077 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 FRMD5Q7Z6J6 570 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 ANKLE1Q8NAG6 615 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 POMGNT1Q8WZA1 660 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 DHX38Q92620 1227 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 CELF4Q9BZC1 486 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 CDHR5Q9HBB8 845 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 TAB2Q9NYJ8 693 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 FRMD4BQ9Y2L6 1034 aa11.2□□□□□ -0.62
VIPAS39-201ENST00000327028 A0A1B0GTH6 734 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TTLL13PA6NNM8 815 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MAPK13O15264 365 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 B4GALT5O43286 388 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TSPAN1O60635 241 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TOM1L1O75674 476 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 PROZP22891 400 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 CASP4P49662 377 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 UBASH3AP57075 661 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MGAT3Q09327 533 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 HSP90AA2PQ14568 343 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 ATF7IP2Q5U623 682 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TRIM59Q8IWR1 403 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 FAM186BQ8IYM0 893 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MRFAP1L1Q96HT8 127 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 XPO4Q9C0E2 1151 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 PCIF1Q9H4Z3 704 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 METTL14Q9HCE5 456 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 ANKFY1Q9P2R3 1169 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 GINS2Q9Y248 185 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TNFSF13BQ9Y275 285 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 USP20Q9Y2K6 914 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 CDY2AQ9Y6F7 541 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 A0A0B4J269 797 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 B4GALT4O60513 344 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 ERLIN2O94905 339 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TPM2P07951 284 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 SFPQP23246 707 aaKnown RBP eCLIP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 EIF4BP23588 611 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MAN2A1Q16706 1144 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 FILIP1LQ4L180 1135 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MPZL3Q6UWV2 235 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 BORCS6Q96GS4 357 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 FBXL18Q96ME1 805 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 NAP1L5Q96NT1 182 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TUBGCP2Q9BSJ2 902 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 SENP6Q9GZR1 1112 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 MCOLN1Q9GZU1 580 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 TRPV6Q9H1D0 765 aa11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 ARMCX3Q9UH62 379 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-201ENST00000327028 ABLIM1O14639 778 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 CSDE1O75534 798 aaKnown RBP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 TPM3P06753 285 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 COL6A1P12109 1028 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 CDC25BP30305 580 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 THPOP40225 353 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 MCL1Q07820 350 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 FAM26DQ5JW98 314 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 CREBRFQ8IUR6 639 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 FAM126BQ8IXS8 530 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 GPD1LQ8N335 351 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 TMEM40Q8WWA1 233 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 SAAL1Q96ER3 474 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 ZBTB45Q96K62 511 aaPredicted RBP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 MSTO1Q9BUK6 570 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 HAPLN2Q9GZV7 340 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 PTPRHQ9HD43 1115 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 RTN4Q9NQC3 1192 aaKnown RBP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 LGALS16A8MUM7 142 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 N4BP3O15049 544 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 EXTL3O43909 919 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 CTSHP09668 335 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 MATR3P43243 847 aaKnown RBP eCLIP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 PPP2R3AQ06190 1150 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 RBL2Q08999 1139 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 NOLC1Q14978 699 aaKnown RBP eCLIP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 TMEM132AQ24JP5 1023 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 CATSPER4Q7RTX7 472 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 PDZD7Q9H5P4 517 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 KIAA1586Q9HCI6 787 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 INTS13Q9NVM9 706 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 AGO2Q9UKV8 859 aaKnown RBP11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 MROH7Q68CQ1 1323 aa11.18□□□□□ -0.62
VIPAS39-201ENST00000327028 GOLGA8IPA6NC78 632 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 GOLGA8JA6NMD2 632 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 CLDN3O15551 220 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 CHRNA1P02708 482 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 ARF4P18085 180 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 AXLP30530 894 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 SNRNP35Q16560 246 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 ZNF568Q3ZCX4 644 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 MIIPQ5JXC2 388 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 INTS8Q75QN2 995 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 CCDC155Q8N6L0 562 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 ZSWIM2Q8NEG5 633 aa11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 NOC4LQ9BVI4 516 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-201ENST00000327028 VPS16Q9H269 839 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms