RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RPA1P27694 616 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 SYCE2Q6PIF2 218 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 PADI6Q6TGC4 694 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 GAD1Q99259 594 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 NFKBIZQ9BYH8 718 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 RNF39Q9H2S5 420 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 UBN1Q9NPG3 1134 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 PRR33A8MZF0 331 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 NPTXRO95502 500 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 CCT6AP40227 531 aaKnown RBP21.63■■□□□ 1.05
LIME1-201ENST00000309546 CBX2Q14781 532 aaPredicted RBP21.63■■□□□ 1.05
LIME1-201ENST00000309546 ZBTB8OSQ8IWT0 167 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 HACE1Q8IYU2 909 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 SUSD6Q92537 303 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 TMEM175Q9BSA9 504 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 VN1R3Q9BXE9 311 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 S1PR5Q9H228 398 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 NXF3Q9H4D5 531 aaKnown RBP21.63■■□□□ 1.05
LIME1-201ENST00000309546 UPF2Q9HAU5 1272 aaKnown RBP21.63■■□□□ 1.05
LIME1-201ENST00000309546 FAN1Q9Y2M0 1017 aa21.63■■□□□ 1.05
LIME1-201ENST00000309546 PRG3Q9Y2Y8 225 aaPredicted RBP21.63■■□□□ 1.05
LIME1-201ENST00000309546 ARL5CA6NH57 179 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 LOC730098B7Z3J9 87 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 NRP1O14786 923 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 ALDH2P05091 517 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 HOXB8P17481 243 aaPredicted RBP21.62■■□□□ 1.05
LIME1-201ENST00000309546 U2AF2P26368 475 aaKnown RBP eCLIP21.62■■□□□ 1.051e-9■■■■□ 23
LIME1-201ENST00000309546 SCNN1GP51170 649 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 GIT2Q14161 759 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 TMEM132AQ24JP5 1023 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 TPRNQ4KMQ1 711 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 ZFP42Q96MM3 310 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 LRWD1Q9UFC0 647 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 CDH22Q9UJ99 828 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 KIF3AQ9Y496 699 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 PCDHB6Q9Y5E3 794 aa21.62■■□□□ 1.05
LIME1-201ENST00000309546 LIG1P18858 919 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 SP100P23497 879 aaPredicted RBP21.61■■□□□ 1.05
LIME1-201ENST00000309546 OR1G1P47890 313 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 FXR2P51116 673 aaKnown RBP eCLIP21.61■■□□□ 1.05
LIME1-201ENST00000309546 PTGDRQ13258 359 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 MCTP1Q6DN14 999 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 SLC27A1Q6PCB7 646 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 C4orf32Q8N8J7 132 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 BSNDQ8WZ55 320 aa21.61■■□□□ 1.05
LIME1-201ENST00000309546 PRMT7Q9NVM4 692 aaPredicted RBP21.61■■□□□ 1.05
LIME1-201ENST00000309546 EPCAMP16422 314 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 AKAP5P24588 427 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 TOB1P50616 345 aaPredicted RBP21.6■■□□□ 1.05
LIME1-201ENST00000309546 PTPN14Q15678 1187 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 ECM1Q16610 540 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 HERC4Q5GLZ8 1057 aaPredicted RBP21.6■■□□□ 1.05
LIME1-201ENST00000309546 CDCA2Q69YH5 1023 aaPredicted RBP21.6■■□□□ 1.05
LIME1-201ENST00000309546 CES5AQ6NT32 575 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 COLGALT2Q8IYK4 626 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 DEPTORQ8TB45 409 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 SNX29Q8TEQ0 813 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 RAB34Q9BZG1 259 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 MIOSQ9NXC5 875 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 PARP2Q9UGN5 583 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 KIAA1024Q9UPX6 916 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 GIT1Q9Y2X7 761 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 IRAK3Q9Y616 596 aa21.6■■□□□ 1.05
LIME1-201ENST00000309546 A0A1B0GUA9 196 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 SPDYE4A6NLX3 237 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 CYP11B2P19099 503 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 RARS2Q5T160 578 aaKnown RBP21.59■■□□□ 1.05
LIME1-201ENST00000309546 PPP4R3CPQ6ZMV5 832 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 PRIMPOLQ96LW4 560 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 C2orf40Q9H1Z8 148 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 BHMT2Q9H2M3 363 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 POLD4Q9HCU8 107 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 DDX19AQ9NUU7 478 aaKnown RBP21.59■■□□□ 1.05
LIME1-201ENST00000309546 MARCH5Q9NX47 278 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 KLK14Q9P0G3 267 aa21.59■■□□□ 1.05
LIME1-201ENST00000309546 C2CD2LO14523 706 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 INPPL1O15357 1258 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 CD2BP2O95400 341 aaKnown RBP21.58■■□□□ 1.05
LIME1-201ENST00000309546 URODP06132 367 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 WEE2P0C1S8 567 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 MUTP22033 750 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 NAMPTP43490 491 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 C12orf76Q8N812 135 aaPredicted RBP21.58■■□□□ 1.05
LIME1-201ENST00000309546 TMX3Q96JJ7 454 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 RPS6KC1Q96S38 1066 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 KIFC3Q9BVG8 833 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 EMILIN2Q9BXX0 1053 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 TSHZ2Q9NRE2 1034 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 DZANK1Q9NVP4 752 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 STK39Q9UEW8 545 aa21.58■■□□□ 1.05
LIME1-201ENST00000309546 NR1I2O75469 434 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 PRKCBP05771 671 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 KLRC2P26717 231 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 ITIH3Q06033 890 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 DSC1Q08554 894 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 PRPF4BQ13523 1007 aaKnown RBP21.57■■□□□ 1.04
LIME1-201ENST00000309546 PPP2R5AQ15172 486 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 MAPK6Q16659 721 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 FAM122AQ96E09 287 aa21.57■■□□□ 1.04
LIME1-201ENST00000309546 HERC2P3Q9BVR0 1158 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms