RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ZSWIM1Q9BR11 485 aa26.28■■□□□ 1.8
SPTSSA-201ENST00000298130 DBR1Q9UK59 544 aaKnown RBP26.28■■□□□ 1.8
SPTSSA-201ENST00000298130 TMX2Q9Y320 296 aa26.28■■□□□ 1.8
SPTSSA-201ENST00000298130 ZBTB12Q9Y330 459 aaPredicted RBP26.28■■□□□ 1.8
SPTSSA-201ENST00000298130 RPTORQ8N122 1335 aa26.28■■□□□ 1.8
SPTSSA-201ENST00000298130 SOX10P56693 466 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 GPC5P78333 572 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 SPP2Q13103 211 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 SNX1Q13596 522 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 CCDC105Q8IYK2 499 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 SEMA4DQ92854 862 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 CCDC114Q96M63 670 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 KREMEN1Q96MU8 473 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 TMEM117Q9H0C3 514 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 ACTN3Q08043 901 aaPredicted RBP26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 NFIL3Q16649 462 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 DAB2IPQ5VWQ8 1189 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 PLA2G4FQ68DD2 849 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 TRPC6Q9Y210 931 aa26.27■■□□□ 1.8
SPTSSA-201ENST00000298130 SPOPO43791 374 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 RAD17O75943 681 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 STRA6Q9BX79 667 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 TMEM39BQ9GZU3 492 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 PABPC3Q9H361 631 aaKnown RBP26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 UGCGQ16739 394 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 SPATS2Q86XZ4 545 aaKnown RBP26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 UBL4BQ8N7F7 174 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 MXRA8Q9BRK3 442 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 VCPKMTQ9H867 229 aa26.26■■□□□ 1.79
SPTSSA-201ENST00000298130 PHF2O75151 1096 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 LLGL2Q6P1M3 1020 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 RHOT2Q8IXI1 618 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 EPS8L1Q8TE68 723 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 TLCD1Q96CP7 247 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 NAP1L3Q99457 506 aaPredicted RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 NUP85Q9BW27 656 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 RANBP17Q9H2T7 1088 aaKnown RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 LARSQ9P2J5 1176 aaKnown RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 MRPL11Q9Y3B7 192 aaKnown RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 MXI1P50539 228 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 TRIP13Q15645 432 aaPredicted RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 INTS8Q75QN2 995 aaKnown RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 OTUD6AQ7L8S5 288 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 HAUS6Q7Z4H7 955 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 CACNA2D3Q8IZS8 1091 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 C1orf54Q8WWF1 131 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 XPO6Q96QU8 1125 aaKnown RBP26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 PAGR1Q9BTK6 254 aa26.25■■□□□ 1.79
SPTSSA-201ENST00000298130 ENTPD3O75355 529 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 DLATP10515 647 aaKnown RBP26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 PEX5P50542 639 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 SUGP1Q8IWZ8 645 aaKnown RBP26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 MRIQ9BWK5 157 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 TRIM7Q9C029 511 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 QTRT2Q9H974 415 aaKnown RBP26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 XXYLT1Q8NBI6 393 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 TATDN2Q93075 761 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 HAUS2Q9NVX0 235 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 CCPG1Q9ULG6 757 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 USP20Q9Y2K6 914 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 RARAP10276 462 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 DRD4P21917 467 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 RARRES1P49788 294 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 B3GNT9Q6UX72 402 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 PI4K2AQ9BTU6 479 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 MLXIPLQ9NP71 852 aa26.24■■□□□ 1.79
SPTSSA-201ENST00000298130 RGS16O15492 202 aaPredicted RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 PPIP5K2O43314 1243 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 ONECUT3O60422 494 aaPredicted RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 CETN1Q12798 172 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 SEL1L2Q5TEA6 688 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 YTHDF3Q7Z739 585 aaKnown RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 ZNF564Q8TBZ8 553 aaPredicted RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 MGARPQ8TDB4 240 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 ZNF653Q96CK0 615 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 FAM118BQ9BPY3 351 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 DDX23Q9BUQ8 820 aaKnown RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 ADAM7Q9H2U9 754 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 SLC40A1Q9NP59 571 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 GGT7Q9UJ14 662 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 CCDC169A6NNP5 214 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 CLDN3O15551 220 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 EIF2AK2P19525 551 aaKnown RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 SSTR3P32745 418 aaPredicted RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 LRRC14Q15048 493 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 FAM102BQ5T8I3 360 aa26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 PRMT1Q99873 361 aaKnown RBP26.23■■□□□ 1.79
SPTSSA-201ENST00000298130 SORBS3O60504 671 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 DHX34Q14147 1143 aaKnown RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 GKAP1Q5VSY0 366 aaPredicted RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 SLC9A9Q8IVB4 645 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 CHURC1Q8WUH1 139 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 ATG4AQ8WYN0 398 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 ACCSQ96QU6 501 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 JPH2Q9BR39 696 aaPredicted RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 RASAL2Q9UJF2 1139 aa26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 NOCTQ9UK39 431 aaKnown RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 TRPC5Q9UL62 973 aaPredicted RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 DIS3Q9Y2L1 958 aaKnown RBP26.22■■□□□ 1.79
SPTSSA-201ENST00000298130 ATRNL1Q5VV63 1379 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms