RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 ATP11CQ8NB49 1132 aa13.61□□□□□ -0.23
PTCD1-201ENST00000292478 MAML1Q92585 1016 aa13.61□□□□□ -0.23
PTCD1-201ENST00000292478 PPWD1Q96BP3 646 aaKnown RBP13.61□□□□□ -0.23
PTCD1-201ENST00000292478 PITPNM2Q9BZ72 1349 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 CNTNAP4Q9C0A0 1308 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 NCF2P19878 526 aaPredicted RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 MAGEA9P43362 315 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 TRIM59Q8IWR1 403 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 APEX2Q9UBZ4 518 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 WDR91A4D1P6 747 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 TTC36A6NLP5 189 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 TADA3O75528 432 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 RFC1P35251 1148 aaPredicted RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 ARPP19P56211 112 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 MAGOHP61326 146 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 RWDD4Q6NW29 188 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 RBM46Q8TBY0 533 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 DPF2Q92785 391 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 DDX47Q9H0S4 455 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 EPB41L4AQ9HCS5 686 aaPredicted RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 UBN1Q9NPG3 1134 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SENP1Q9P0U3 644 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 PIK3C2BO00750 1634 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 GSTA4O15217 222 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 ESRRGP62508 458 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 MDM2Q00987 491 aaPredicted RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 ROR1Q01973 937 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 PDIA6Q15084 440 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 PRR5LQ6MZQ0 368 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 RNF25Q96BH1 459 aaPredicted RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SAAL1Q96ER3 474 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SPATA33Q96N06 139 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 MKNK1Q9BUB5 465 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 TRAIPQ9BWF2 469 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 UPF3AQ9H1J1 476 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 WDR35Q9P2L0 1181 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 ZNRF3Q9ULT6 936 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 APOBEC2Q9Y235 224 aaKnown RBP13.6□□□□□ -0.23
PTCD1-201ENST00000292478 CNTNAP5Q8WYK1 1306 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 XRRA1Q6P2D8 792 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 TRIM67Q6ZTA4 783 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SPDL1Q96EA4 605 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SCOCQ9UIL1 159 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 SPATA31A1Q5TZJ5 1347 aa13.6□□□□□ -0.23
PTCD1-201ENST00000292478 IQGAP1P46940 1657 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 GNGT2O14610 69 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 P4HA2O15460 535 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 FMR1Q06787 632 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 ACAP3Q96P50 834 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 DNAJC17Q9NVM6 304 aaKnown RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TRIM49P0CI25 452 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TRIM49CP0CI26 452 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 RASA1P20936 1047 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 HEATR6Q6AI08 1181 aaKnown RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 KSR1Q8IVT5 923 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 SYN2Q92777 582 aaPredicted RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TTC17Q96AE7 1141 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 KIF9Q9HAQ2 790 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 MAFGO15525 162 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 STMN1P16949 149 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 NFX1Q12986 1120 aaKnown RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 COG2Q14746 738 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 STAT4Q14765 748 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TWF2Q6IBS0 349 aaKnown RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 LRIG3Q6UXM1 1119 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 ATL2Q8NHH9 583 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 HSPBP1Q9NZL4 362 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 HDAC6Q9UBN7 1215 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 H3BRJ5 948 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 NDUFB10O96000 172 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 HNRNPH2P55795 449 aaKnown RBP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TAF11Q15544 211 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 EFHC2Q5JST6 749 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 RCOR2Q8IZ40 523 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 DCLK2Q8N568 766 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTCD1-201ENST00000292478 TRIM33Q9UPN9 1127 aa13.59□□□□□ -0.23
PTCD1-201ENST00000292478 PDHBP11177 359 aa13.58□□□□□ -0.23
PTCD1-201ENST00000292478 FDPSP14324 419 aaKnown RBP13.58□□□□□ -0.23
PTCD1-201ENST00000292478 BCAR1P56945 870 aa13.58□□□□□ -0.23
PTCD1-201ENST00000292478 ZNF211Q13398 564 aaPredicted RBP13.58□□□□□ -0.23
PTCD1-201ENST00000292478 MXD4Q14582 209 aaPredicted RBP13.58□□□□□ -0.23
PTCD1-201ENST00000292478 ACAD11Q709F0 780 aa13.58□□□□□ -0.23
PTCD1-201ENST00000292478 GIPC2Q8TF65 315 aa13.58□□□□□ -0.23
PTCD1-201ENST00000292478 CCDC124Q96CT7 223 aaKnown RBP13.58□□□□□ -0.23
PTCD1-201ENST00000292478 RNPC3Q96LT9 517 aaKnown RBP13.58□□□□□ -0.23
PTCD1-201ENST00000292478 RIT2Q99578 217 aa13.58□□□□□ -0.23
PTCD1-201ENST00000292478 SPATA31A6Q5VVP1 1343 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 PPP4CP60510 307 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 E4F1Q66K89 784 aaPredicted RBP13.58□□□□□ -0.24
PTCD1-201ENST00000292478 RSBN1LQ6PCB5 846 aaPredicted RBP13.58□□□□□ -0.24
PTCD1-201ENST00000292478 MYLK4Q86YV6 388 aaPredicted RBP13.58□□□□□ -0.24
PTCD1-201ENST00000292478 URGCPQ8TCY9 931 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 PPCSQ9HAB8 311 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 TECPR2O15040 1411 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 ADAMTS13Q76LX8 1427 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 AP3B1O00203 1094 aa13.58□□□□□ -0.24
PTCD1-201ENST00000292478 DNAJC8O75937 253 aaPredicted RBP13.58□□□□□ -0.24
PTCD1-201ENST00000292478 NMT1P30419 496 aaKnown RBP13.58□□□□□ -0.24
PTCD1-201ENST00000292478 CASP2P42575 452 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms