RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GOLGA8MH3BSY2 632 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 GNGT2O14610 69 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 SLC26A4O43511 780 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 TRPA1O75762 1119 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 GALCP54803 685 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 PSMC1P62191 440 aaKnown RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 MKRN3Q13064 507 aaKnown RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 FSCBQ5H9T9 825 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 IZUMO3Q5VZ72 239 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 GPD1LQ8N335 351 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 PPM1NQ8N819 430 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 KCNB2Q92953 911 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 NBPF3Q9H094 633 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 ETNK1Q9HBU6 452 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 DDX56Q9NY93 547 aaKnown RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 PCSK1NQ9UHG2 260 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 PCDHA10Q9Y5I2 948 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 CD163L1Q9NR16 1453 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 NCOA3Q9Y6Q9 1424 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 KPNA7A9QM74 516 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 CASP2P42575 452 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 OCRLQ01968 901 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 GUCY1A3Q02108 690 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 PDIA2Q13087 525 aaKnown RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 KIAA1755Q5JYT7 1200 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 SP8Q8IXZ3 490 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 MAP3K14Q99558 947 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 FAM49AQ9H0Q0 323 aaPredicted RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 DEPDC5O75140 1603 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 SETSIPP0DME0 302 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 STMN1P16949 149 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 SCP2P22307 547 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 MDH1P40925 334 aaKnown RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 BCAR1P56945 870 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 DEUP1Q05D60 604 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 STAT4Q14765 748 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 DSTYKQ6XUX3 929 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 TRIM67Q6ZTA4 783 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 ATL2Q8NHH9 583 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 C1orf54Q8WWF1 131 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 CYTH2Q99418 400 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 TSPYL2Q9H2G4 693 aaPredicted RBP11.44□□□□□ -0.58
CD44-201ENST00000263398 ZNF302Q9NR11 478 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 HPS5Q9UPZ3 1129 aa11.44□□□□□ -0.58
CD44-201ENST00000263398 CHEK2O96017 543 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 SLC1A1P43005 524 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 GPC3P51654 580 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 ARFIP2P53365 341 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 AP3M2P53677 418 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 POLE2P56282 527 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 SPP2Q13103 211 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 NFIXQ14938 502 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 GPR162Q16538 588 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DALRD3Q5D0E6 543 aaKnown RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 ZBED8Q8IZ13 594 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 CCDC138Q96M89 665 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 RBAKQ9NYW8 714 aaPredicted RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 UVRAGQ9P2Y5 699 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 APEX2Q9UBZ4 518 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 AGO2Q9UKV8 859 aaKnown RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 ZHX2Q9Y6X8 837 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 KIAA1210Q9ULL0 1709 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 A0A1W2PQJ5 194 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 MEFVO15553 781 aaPredicted RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 PPFIA2O75334 1257 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DNAJC8O75937 253 aaPredicted RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 PMLP29590 882 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 TAP1Q03518 808 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 LDHDQ86WU2 507 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 ST13P4Q8IZP2 240 aaPredicted RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 TIPINQ9BVW5 301 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 SENP2Q9HC62 589 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DCTN4Q9UJW0 460 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 TMEM131LA2VDJ0 1609 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 PPLO60437 1756 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 AGTP01019 485 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 TAC1P20366 129 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 LRRC14Q15048 493 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 MRPL4Q9BYD3 311 aaKnown RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 PNMA3Q9UL41 463 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 ORC6Q9Y5N6 252 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 DLC1Q96QB1 1528 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 PAMP19021 973 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 KRT17Q04695 432 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 BIRC2Q13490 618 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 NCAPHQ15003 741 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 NAB2Q15742 525 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DUOXA2Q1HG44 320 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 SRLQ86TD4 932 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 POLR3FQ9H1D9 316 aaPredicted RBP11.43□□□□□ -0.58
CD44-201ENST00000263398 PARVAQ9NVD7 372 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 TRIM10Q9UDY6 481 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 STAP1Q9ULZ2 295 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 DAGLAQ9Y4D2 1042 aa11.43□□□□□ -0.58
CD44-201ENST00000263398 CNTNAP5Q8WYK1 1306 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 KIAA0391O15091 583 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 CYP26A1O43174 497 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 PFDN1O60925 122 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms