RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RNF25Q96BH1 459 aaPredicted RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 HSD17B14Q9BPX1 270 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 HEMGNQ9BXL5 484 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 PABPC3Q9H361 631 aaKnown RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 ZBTB12Q9Y330 459 aaPredicted RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 CLDN3O15551 220 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 PYGMP11217 842 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 EIF3BP55884 814 aaKnown RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 PPP3CAQ08209 521 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 SNCBQ16143 134 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 MOXD1Q6UVY6 613 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 CAPN12Q6ZSI9 719 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 KIFC3Q9BVG8 833 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 NUP85Q9BW27 656 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 ARHGEF10LQ9HCE6 1279 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 INTUQ9ULD6 942 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 POLRMTO00411 1230 aaKnown RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 RGL2O15211 777 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 NF2P35240 595 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 RHOT2Q8IXI1 618 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 ADAM33Q9BZ11 813 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 PPP1R1BQ9UD71 204 aaPredicted RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 USTQ9Y2C2 406 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 CTDP1Q9Y5B0 961 aaPredicted RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 SCTRP47872 440 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 TNIP1Q15025 636 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 ILDR2Q71H61 639 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 SLC47A2Q86VL8 602 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 ZC3H3Q8IXZ2 948 aaKnown RBP13.59□□□□□ -0.23
LIG1-201ENST00000263274 ATG4AQ8WYN0 398 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 PRMT6Q96LA8 375 aaPredicted RBP13.59□□□□□ -0.23
LIG1-201ENST00000263274 STK24Q9Y6E0 443 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 LAMB2P55268 1798 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 CHUKO15111 745 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 ECE2O60344 883 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 ALDH1B1P30837 517 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 BYSLQ13895 437 aaKnown RBP13.59□□□□□ -0.23
LIG1-201ENST00000263274 AOC3Q16853 763 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 DUPD1Q68J44 220 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 PRELID2Q8N945 189 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 ZNF564Q8TBZ8 553 aaPredicted RBP13.59□□□□□ -0.23
LIG1-201ENST00000263274 ATP8B4Q8TF62 1192 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 N4BP2L2Q92802 583 aaPredicted RBP13.59□□□□□ -0.23
LIG1-201ENST00000263274 STK38LQ9Y2H1 464 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 SUGT1Q9Y2Z0 365 aa13.59□□□□□ -0.23
LIG1-201ENST00000263274 KIAA0391O15091 583 aaKnown RBP13.58□□□□□ -0.23
LIG1-201ENST00000263274 EIF3DO15371 548 aaKnown RBP eCLIP13.58□□□□□ -0.23
LIG1-201ENST00000263274 PHF2O75151 1096 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 MMP10P09238 476 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 HOXA10P31260 410 aaPredicted RBP13.58□□□□□ -0.23
LIG1-201ENST00000263274 NPEPPSP55786 919 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 PPATQ06203 517 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 SGO2Q562F6 1265 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 ANKRD20A8PQ5CZ79 823 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 CYB5D1Q6P9G0 228 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 PARP9Q8IXQ6 854 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 DHX38Q92620 1227 aaKnown RBP13.58□□□□□ -0.23
LIG1-201ENST00000263274 MKL1Q969V6 931 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 CNOT10Q9H9A5 744 aaKnown RBP13.58□□□□□ -0.23
LIG1-201ENST00000263274 EHMT1Q9H9B1 1298 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 TUFT1Q9NNX1 390 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 TRPC6Q9Y210 931 aa13.58□□□□□ -0.23
LIG1-201ENST00000263274 TNRC6CQ9HCJ0 1690 aaKnown RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 ZMYM2Q9UBW7 1377 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 SYNGAP1Q96PV0 1343 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 GTPBP10A4D1E9 387 aaKnown RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 ANKRD63C9JTQ0 380 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 ALAS1P13196 640 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 SMTNP53814 917 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 RRP1BQ14684 758 aaKnown RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 BMT2Q1RMZ1 405 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 HP1BP3Q5SSJ5 553 aaPredicted RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 DAB2IPQ5VWQ8 1189 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 LMBRD2Q68DH5 695 aaPredicted RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 TATDN2Q93075 761 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 BICD1Q96G01 975 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 MBOAT7Q96N66 472 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 PI4K2AQ9BTU6 479 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 DDX23Q9BUQ8 820 aaKnown RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 ADRA2BP18089 450 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 PPP2R5EQ16537 467 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 XKR9Q5GH70 373 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 NUGGCQ68CJ6 796 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 TTC27Q6P3X3 843 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 XXYLT1Q8NBI6 393 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 ZDHHC15Q96MV8 337 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 PWWP2AQ96N64 755 aa13.58□□□□□ -0.24
LIG1-201ENST00000263274 ACTR5Q9H9F9 607 aaPredicted RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 TOPORSQ9NS56 1045 aaPredicted RBP13.58□□□□□ -0.24
LIG1-201ENST00000263274 FAM187AA6NFU0 413 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PSMD10O75832 226 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 CHRNA3P32297 505 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 DHX34Q14147 1143 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 RNF207Q6ZRF8 634 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PODNQ7Z5L7 613 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 CCDC63Q8NA47 563 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 AGBL1Q96MI9 1066 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PCDHB18PQ96TA0 734 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ZSWIM1Q9BR11 485 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 WDR11Q9BZH6 1224 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms