RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ARP10275 920 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 BMP3P12645 472 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 MTMR3Q13615 1198 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 OTUD6AQ7L8S5 288 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 OTOP1Q7RTM1 612 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 EPS8L3Q8TE67 593 aaKnown RBP10.84□□□□□ -0.67
LIG3-201ENST00000262327 FAM151AQ8WW52 585 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 FAM20AQ96MK3 541 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 HSD17B14Q9BPX1 270 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 APEX2Q9UBZ4 518 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 PRR12Q9ULL5 1215 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 EMSYQ7Z589 1322 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 IGLV3-22A0A075B6J6 115 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 GAS7O60861 476 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 TMEM253P0C7T8 217 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 RPL21P46778 160 aaKnown RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 PMS2P54278 862 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 PTENP60484 403 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 BMT2Q1RMZ1 405 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 C11orf91Q3C1V1 193 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 TTC27Q6P3X3 843 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ZNF720Q7Z2F6 126 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 FAM83AQ86UY5 434 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ACER1Q8TDN7 264 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ZNF526Q8TF50 670 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 FIZ1Q96SL8 496 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 MYOZ2Q9NPC6 264 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 A0A0A6YYK5 440 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 MMEP08473 750 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 HOXA7P31268 230 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 ADCY1Q08828 1119 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 LRRC14Q15048 493 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 E2F5Q15329 346 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 DUPD1Q68J44 220 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ZDHHC24Q6UX98 284 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 RPUSD2Q8IZ73 545 aaKnown RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 GLT8D2Q9H1C3 349 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 SLC24A3Q9HC58 644 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ZDHHC18Q9NUE0 388 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 NYAP2Q9P242 653 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 GOLGA6L10A0A0M3HER8 536 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 BHMG1C9JSJ3 638 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 CALRP27797 417 aaKnown RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 INHBEP58166 350 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 SARNPP82979 210 aaKnown RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 SETQ01105 290 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 PPP3CAQ08209 521 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 SNX1Q13596 522 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 ANKRD20A8PQ5CZ79 823 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 AGBL2Q5U5Z8 902 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 DENND2CQ68D51 928 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 NAIF1Q69YI7 327 aaPredicted RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 XPO6Q96QU8 1125 aaKnown RBP10.83□□□□□ -0.68
LIG3-201ENST00000262327 AGPAT1Q99943 283 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 CBWD1Q9BRT8 395 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 RAB17Q9H0T7 212 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 OLFML3Q9NRN5 406 aa10.83□□□□□ -0.68
LIG3-201ENST00000262327 K7ENM7 598 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 KIAA0391O15091 583 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 TBX3O15119 743 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 HIP1RO75146 1068 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 SGPL1O95470 568 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 PYGMP11217 842 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 DRD4P21917 467 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 COMTP21964 271 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 GMPSP49915 693 aaPredicted RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 TRIP13Q15645 432 aaPredicted RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 GKAP1Q5VSY0 366 aaPredicted RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 TATDN1Q6P1N9 297 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 TAX1BP1Q86VP1 789 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 SPATS2Q86XZ4 545 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 PRELID2Q8N945 189 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 TATDN2Q93075 761 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 MKL1Q969V6 931 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 PCDHB18PQ96TA0 734 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 PRMT1Q99873 361 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 POLR3CQ9BUI4 534 aaPredicted RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 UNC45AQ9H3U1 944 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 HERC5Q9UII4 1024 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 SCAF8Q9UPN6 1271 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 KIF3CO14782 793 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 PPFIA2O75334 1257 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 VIMP08670 466 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 CREB1P16220 341 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 VCAM1P19320 739 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 SCTRP47872 440 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 CDR1P51861 262 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 BFSP1Q12934 665 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 EPC2Q52LR7 807 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 C2CD6Q53TS8 623 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 MOXD1Q6UVY6 613 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 CCDC105Q8IYK2 499 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 LRRC34Q8IZ02 419 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 NEK9Q8TD19 979 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 FAXDC2Q96IV6 333 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 ELAC2Q9BQ52 826 aaKnown RBP10.82□□□□□ -0.68
LIG3-201ENST00000262327 LXNQ9BS40 222 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 SYT11Q9BT88 431 aa10.82□□□□□ -0.68
LIG3-201ENST00000262327 ANKRD62A6NC57 917 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 RGS16O15492 202 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms