RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 SLC12A6Q9UHW9 1150 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 NFIBO00712 420 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 MEFVO15553 781 aaPredicted RBP17.7■□□□□ 0.42
HOXD3-201ENST00000249440 RAD17O75943 681 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 USP8P40818 1118 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 LIG3P49916 1009 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 KCTD19Q17RG1 926 aaPredicted RBP17.7■□□□□ 0.42
HOXD3-201ENST00000249440 KRT71Q3SY84 523 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 C1orf220Q5T0J3 134 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 SLC17A8Q8NDX2 589 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 MORC4Q8TE76 937 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 GMLQ99445 158 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 TMEM117Q9H0C3 514 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 PPANQ9NQ55 473 aaKnown RBP17.7■□□□□ 0.42
HOXD3-201ENST00000249440 NOVA2Q9UNW9 492 aaKnown RBP17.7■□□□□ 0.42
HOXD3-201ENST00000249440 BCS1LQ9Y276 419 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 USP20Q9Y2K6 914 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 UBIAD1Q9Y5Z9 338 aa17.7■□□□□ 0.42
HOXD3-201ENST00000249440 CHRNA3P32297 505 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 COPB2P35606 906 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 YTHDF3Q7Z739 585 aaKnown RBP17.69■□□□□ 0.42
HOXD3-201ENST00000249440 FAM83AQ86UY5 434 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 JAMLQ86YT9 394 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 CDAN1Q8IWY9 1227 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 IL31RAQ8NI17 732 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 CLEC4DQ8WXI8 215 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 GLG1Q92896 1179 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 ZSWIM1Q9BR11 485 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 TXLNGYQ9BZA5 131 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 ZDHHC18Q9NUE0 388 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 PHF2O75151 1096 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 GGPS1O95749 300 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 GHRHRQ02643 423 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 OTUD6BQ8N6M0 293 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 C3orf20Q8ND61 904 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 EPS8L1Q8TE68 723 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 EFCC1Q9HA90 598 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 GGA2Q9UJY4 613 aa17.69■□□□□ 0.42
HOXD3-201ENST00000249440 BRCA1P38398 1863 aaKnown RBP17.68■□□□□ 0.42
HOXD3-201ENST00000249440 GMNCA6NCL1 334 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 MTA2O94776 668 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 GBP1P32455 592 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 PEX3P56589 373 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 MRPS9P82933 396 aaKnown RBP17.68■□□□□ 0.42
HOXD3-201ENST00000249440 SEL1L2Q5TEA6 688 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 C4orf19Q8IY42 314 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 FAM71AQ8IYT1 594 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 WNT8AQ9H1J5 351 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 MAP3K20Q9NYL2 800 aaKnown RBP17.68■□□□□ 0.42
HOXD3-201ENST00000249440 EXOC7Q9UPT5 735 aa17.68■□□□□ 0.42
HOXD3-201ENST00000249440 PODXLO00592 558 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 SLC16A4O15374 487 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 SGPL1O95470 568 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 CDR1P51861 262 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 MFAP3P55082 362 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 NCKAP1LP55160 1127 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 MESDQ14696 234 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ZNF746Q6NUN9 644 aaPredicted RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 HOOK3Q86VS8 718 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PPM1KQ8N3J5 372 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PLEKHO2Q8TD55 490 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 KRT35Q92764 455 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PCYOX1Q9UHG3 505 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 NOCTQ9UK39 431 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ZBTB12Q9Y330 459 aaPredicted RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 COL4A5P29400 1685 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 TMEM110-MUSTN1A8MSY1 372 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 KIAA0391O15091 583 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ALAS1P13196 640 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 COMTP21964 271 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PEX5P50542 639 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PLTPP55058 493 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 MAGOHP61326 146 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 RASA3Q14644 834 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 NOP9Q86U38 636 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 CPXCR1Q8N123 301 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ZSWIM2Q8NEG5 633 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 KAT5Q92993 513 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 MAGOHBQ96A72 148 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PCDHB18PQ96TA0 734 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PSMD1Q99460 953 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 SH2D3AQ9BRG2 576 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ZNF341Q9BYN7 854 aa17.67■□□□□ 0.42
HOXD3-201ENST00000249440 PABPC3Q9H361 631 aaKnown RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 ASTN2O75129 1339 aaPredicted RBP17.67■□□□□ 0.42
HOXD3-201ENST00000249440 WDR46O15213 610 aaKnown RBP17.66■□□□□ 0.42
HOXD3-201ENST00000249440 TRAPPC3O43617 180 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 NUDT17P0C025 328 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 CHRNB2P17787 502 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 CTNNA2P26232 953 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 SMTNP53814 917 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 PMS2P54278 862 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 MCCD1P59942 119 aaPredicted RBP17.66■□□□□ 0.42
HOXD3-201ENST00000249440 PSMC5P62195 406 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 SNRNP35Q16560 246 aaKnown RBP17.66■□□□□ 0.42
HOXD3-201ENST00000249440 AADACL2Q6P093 401 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 LARGE2Q8N3Y3 721 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 TTLL6Q8N841 843 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 C18orf8Q96DM3 657 aa17.66■□□□□ 0.42
HOXD3-201ENST00000249440 PARP2Q9UGN5 583 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms