RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SEPT14Q6ZU15 432 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 MAEAQ7L5Y9 396 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 OTOP1Q7RTM1 612 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 CCDC105Q8IYK2 499 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 RPUSD2Q8IZ73 545 aaKnown RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 AGAP11Q8TF27 550 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 ART4Q93070 314 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 AMNQ9BXJ7 453 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 CCDC134Q9H6E4 229 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 ATP6V0A4Q9HBG4 840 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 PARVGQ9HBI0 331 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 TRPC5Q9UL62 973 aaPredicted RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 ZNF831Q5JPB2 1677 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 EIF3DO15371 548 aaKnown RBP eCLIP13.34□□□□□ -0.27
NUP88-201ENST00000225696 GDF11O95390 407 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 CHRNB2P17787 502 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 PAX7P23759 505 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 COILP38432 576 aaPredicted RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 ADCY2Q08462 1091 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 ADCY1Q08828 1119 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 BFSP1Q12934 665 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 ZNF568Q3ZCX4 644 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 VSTM1Q6UX27 236 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 CD101Q93033 1021 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 RASAL2Q9UJF2 1139 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 FRMD4BQ9Y2L6 1034 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 GREB1LQ9C091 1923 aaPredicted RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 SYNGAP1Q96PV0 1343 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 TMEM120BA0PK00 339 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 F5H6K3 240 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 EXOC3O60645 756 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 CALCAP01258 141 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 RARGP13631 454 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 SLC8A1P32418 973 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 CIITAP33076 1130 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 ZNF76P36508 570 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 GCLMP48507 274 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 ALDH5A1P51649 535 aaPredicted RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 CLNS1AP54105 237 aaKnown RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 IKQ13123 557 aaPredicted RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 TNIP1Q15025 636 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 ODR4Q5SWX8 454 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 NSMFQ6X4W1 530 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 SH3BP5LQ7L8J4 393 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 FBXO11Q86XK2 927 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 FAM178BQ8IXR5 827 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 SPICE1Q8N0Z3 855 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 PLEKHO2Q8TD55 490 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 NSMCE1Q8WV22 266 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 C1orf54Q8WWF1 131 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 TACO1Q9BSH4 297 aaKnown RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 GLT8D2Q9H1C3 349 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 CDC42EP4Q9H3Q1 356 aaKnown RBP13.34□□□□□ -0.27
NUP88-201ENST00000225696 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.34□□□□□ -0.27
NUP88-201ENST00000225696 EMSYQ7Z589 1322 aa13.34□□□□□ -0.27
NUP88-201ENST00000225696 TAF1LQ8IZX4 1826 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 IGF2BP3O00425 579 aaKnown RBP eCLIP13.33□□□□□ -0.28
NUP88-201ENST00000225696 SKAP2O75563 359 aaPredicted RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 GSTA1P08263 222 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 DLATP10515 647 aaKnown RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 GAP43P17677 238 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 SNX1Q13596 522 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 TRIP13Q15645 432 aaPredicted RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 SLC15A2Q16348 729 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 PPP2R5EQ16537 467 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 C1orf220Q5T0J3 134 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 C11orf63Q6NUN7 778 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 PAXIP1Q6ZW49 1069 aaPredicted RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 NOP9Q86U38 636 aaKnown RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 TAX1BP1Q86VP1 789 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 SLC13A5Q86YT5 568 aaPredicted RBP13.33□□□□□ -0.28
NUP88-201ENST00000225696 RHOT2Q8IXI1 618 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 CYP4X1Q8N118 509 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 DAW1Q8N136 415 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 ANKRD42Q8N9B4 389 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 GDAP1Q8TB36 358 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 MKL1Q969V6 931 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 HERPUD2Q9BSE4 406 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 MKNK1Q9BUB5 465 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 TMEM109Q9BVC6 243 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 ECT2Q9H8V3 914 aa13.33□□□□□ -0.28
NUP88-201ENST00000225696 PODXLO00592 558 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 CLDN3O15551 220 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ANP32DO95626 131 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 NDUFB10O96000 172 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 KRT16P08779 473 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 MMP14P50281 582 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 HADHBP55084 474 aaKnown RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 GPC5P78333 572 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ZKSCAN8Q15776 578 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 GALNTL6Q49A17 601 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 CERKLQ49MI3 558 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 TBC1D10BQ4KMP7 808 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 HS2ST1Q7LGA3 356 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 SLC47A2Q86VL8 602 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 UBL4BQ8N7F7 174 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ATG4AQ8WYN0 398 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ARHGEF2Q92974 986 aaKnown RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 RMDN2Q96LZ7 410 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 SH2D3AQ9BRG2 576 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms