RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	SIZ1	Q04195	904 aa		5.52	□□□□□ -1.53
RPT3	YDR394W	TSR2	Q06672	205 aa	Known RBP	5.52	□□□□□ -1.53
RPT3	YDR394W	ASR1	Q06834	288 aa		5.52	□□□□□ -1.53
RPT3	YDR394W	YOR283W	Q12040	230 aa	Known RBP	5.52	□□□□□ -1.53
RPT3	YDR394W	SLH1	P53327	1967 aa	Known RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	COX9	P07255	59 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	MRP1	P10662	321 aa	Known RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	SAR1	P20606	190 aa	Known RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	FUN19	P28003	413 aa	Predicted RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	YEF1	P32622	495 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	NIC96	P34077	839 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	JEN1	P36035	616 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	ANR2	P36090	516 aa	Predicted RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	THI2	P38141	450 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	ANS1	P38832	159 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	YNL195C	P40168	261 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	MNN5	P46982	586 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	ALB1	P47019	175 aa	Predicted RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	IBA57	P47158	497 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	TPC1	P53257	314 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	MRPL50	P53724	139 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	CWC24	P53769	259 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	SNO4	Q04902	237 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	HSP33	Q08914	237 aa	Known RBP	5.51	□□□□□ -1.53
RPT3	YDR394W	HSP32	Q08992	237 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	YLR099W-A	Q3E798	87 aa		5.51	□□□□□ -1.53
RPT3	YDR394W	HIS3	P06633	220 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	SPS2	P08459	502 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	ATG22	P25568	528 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	ERG9	P29704	444 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	ITR1	P30605	584 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	TIM12	P32830	109 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	YKL107W	P34251	309 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	YKL071W	P36086	256 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	MRPL3	P36516	390 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	MSS4	P38994	779 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	HPA3	P39979	161 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	SDP1	P40479	209 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	PMT6	P42934	759 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	CIS3	P47001	227 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	YMR130W	Q04223	302 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	MFB1	Q04922	465 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	SSK1	Q07084	712 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	YLR030W	Q07967	263 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	5.5	□□□□□ -1.53	not detected
RPT3	YDR394W	MTR10	Q99189	972 aa		5.5	□□□□□ -1.53
RPT3	YDR394W	GCN4	P03069	281 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	PEP4	P07267	405 aa	Known RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	BAR1	P12630	587 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	ERD2	P18414	219 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	PUT3	P25502	979 aa	Predicted RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	YCL002C	P25565	263 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	PAU2	P32612	120 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	MDL1	P33310	695 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	MTH1	P35198	433 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	GPX1	P36014	167 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	MAL32	P38158	584 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	RRP4	P38792	359 aa	Known RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	SFH5	P47008	294 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	MAL12	P53341	584 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	YNR062C	P53748	327 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	PLP1	Q04004	230 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	COA4	Q05809	96 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	RRP9	Q06506	573 aa	Known RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	FMP40	Q08968	688 aa	Predicted RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	ENV7	Q12003	364 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	ATG41	Q12048	136 aa		5.49	□□□□□ -1.53
RPT3	YDR394W	TIR4	Q12218	487 aa	Predicted RBP	5.49	□□□□□ -1.53
RPT3	YDR394W	YLR358C	O13565	187 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	GAL4	P04386	881 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	RPS18A	P0CX55	146 aa	Known RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	RPS18B	P0CX56	146 aa	Predicted RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	NCP1	P16603	691 aa	Known RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	GRX2	P17695	143 aa	Known RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	NUP1	P20676	1076 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	YCR102C	P25608	368 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	TRS65	P32893	560 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	MSN4	P33749	630 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	YKL063C	P35725	167 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	VBA2	P38358	474 aa	Known RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	RPP1	P38786	293 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	HTD2	P38790	280 aa	Known RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	PZF1	P39933	429 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	YIL067C	P40514	678 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	PKP1	P40530	394 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	DPB11	P47027	764 aa	Predicted RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	VOA1	P53262	265 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	SUN4	P53616	420 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	SNP1	Q00916	300 aa	Predicted RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	NCE101	Q02820	53 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	INP1	Q03694	420 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	HLR1	Q04429	423 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	YLR283W	Q05867	314 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	STP3	Q05937	343 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	YPR174C	Q06616	221 aa	Predicted RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	LUC7	Q07508	261 aa	Predicted RBP	5.48	□□□□□ -1.53
RPT3	YDR394W	YDL109C	Q12103	647 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	MDM32	Q12171	622 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	PSF1	Q12488	208 aa		5.48	□□□□□ -1.53
RPT3	YDR394W	SET6	Q12529	373 aa		5.48	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms