RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF254O75437 659 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PGRP06401 933 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 DDX6P26196 483 aaKnown RBP eCLIP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SERPINB3P29508 390 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CAPRIN1Q14444 709 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CDCA2Q69YH5 1023 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 LRRC31Q6UY01 552 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 KIF18BQ86Y91 864 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ANLNQ9NQW6 1124 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PIKFYVEQ9Y2I7 2098 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM120BA0PK00 339 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ATP2B4P23634 1241 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SLC9A3P48764 834 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ATXN1P54253 815 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 MRPS9P82933 396 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 USF2Q15853 346 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GPATCH4Q5T3I0 446 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 KDM1BQ8NB78 822 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RNF139Q8WU17 664 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC43Q96MW1 224 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 APOL2Q9BQE5 337 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TBCDQ9BTW9 1192 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 HERC2P3Q9BVR0 1158 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SAMD15Q9P1V8 674 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM33Q9UPN9 1127 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 C15orf41Q9Y2V0 281 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RAD50Q92878 1312 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PRPF3O43395 683 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ADCY3O60266 1144 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 VAV1P15498 845 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 FECHP22830 423 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ETFBP38117 255 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 NFIL3Q16649 462 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RNF151Q2KHN1 245 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 IFIT1BQ5T764 474 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PDXDC1Q6P996 788 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RRAGAQ7L523 313 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CAND1Q86VP6 1230 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PIK3C3Q8NEB9 887 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 MRPS27Q92552 414 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PGBD1Q96JS3 809 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TSEN34Q9BSV6 310 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 C11orf84Q9BUA3 381 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RYDENQ9NUL5 291 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PLSCR1O15162 318 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 AP3M2P53677 418 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PODNQ7Z5L7 613 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 OR6J1Q8NGC5 347 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 BTN2A2Q8WVV5 523 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 BRF1Q92994 677 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RBM41Q96IZ5 413 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 EYA1Q99502 592 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SOX13Q9UN79 622 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 MYH14Q7Z406 1995 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TTC41PQ6P2S7 1318 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 F8W8V4 182 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 FSBPO95073 299 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 L1CAMP32004 1257 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GSDMDP57764 484 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RPP38P78345 283 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 B3GNT6Q6ZMB0 384 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CLVS1Q8IUQ0 354 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 NUSAP1Q9BXS6 441 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 FOXO6A8MYZ6 492 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 KRIT1O00522 736 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ETV3P41162 512 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CAPZA2P47755 286 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 NR1D2Q14995 579 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 JADE1Q6IE81 842 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RNF19BQ6ZMZ0 732 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GPRASP2Q96D09 838 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ZSCAN31Q96LW9 406 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SETDB2Q96T68 719 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GAL3ST1Q99999 423 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ABCG8Q9H221 673 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 BATF3Q9NR55 127 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D23Q9NUY8 699 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 HMGXB4Q9UGU5 601 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 POLR2AP24928 1970 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 J3KRW8 73 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 DDX3XO00571 662 aaKnown RBP eCLIP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 DCTN3O75935 186 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 APEHP13798 732 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RGS7P49802 495 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GPC3P51654 580 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC102BQ68D86 513 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 RTL10Q7L3V2 364 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 NLRC3Q7RTR2 1065 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 STARD8Q92502 1023 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 AKAP1Q92667 903 aaKnown RBP eCLIP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TPD52L3Q96J77 140 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CAB39LQ9H9S4 337 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 AIPL1Q9NZN9 384 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TTC34A8MYJ7 566 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PROCP04070 461 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MAPK3P27361 379 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TAP1Q03518 808 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MAPK6Q16659 721 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SPOPLQ6IQ16 392 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HMBOX1Q6NT76 420 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms