RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 SRGAP2BP0DMP2 458 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 RARRES1P49788 294 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 MXD4Q14582 209 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-211ENST00000641009 HERC4Q5GLZ8 1057 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-211ENST00000641009 SYCE2Q6PIF2 218 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 MRPL10Q7Z7H8 261 aaKnown RBP15.5■□□□□ 0.07
LINC00339-211ENST00000641009 ZNF280BQ86YH2 543 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 VPS52Q8N1B4 723 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 ASAP3Q8TDY4 903 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 PIGOQ8TEQ8 1089 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 AUTS2Q8WXX7 1259 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 SUSD6Q92537 303 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 IGSF21Q96ID5 467 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 PHF7Q9BWX1 381 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-211ENST00000641009 S1PR5Q9H228 398 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 ANKEF1Q9NU02 776 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 HCFC2Q9Y5Z7 792 aa15.5■□□□□ 0.07
LINC00339-211ENST00000641009 PLXNA3P51805 1871 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 TRIP11Q15643 1979 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 LOC730098B7Z3J9 87 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 DGAT1O75907 488 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 CXCL14O95715 111 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 PLA2G5P39877 138 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 SLC11A1P49279 550 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 PTENP60484 403 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 CAPSQ13938 189 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 SAFBQ15424 915 aaKnown RBP eCLIP15.49■□□□□ 0.07
LINC00339-211ENST00000641009 URGCPQ8TCY9 931 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 CPB2Q96IY4 423 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 C8orf76Q96K31 380 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 RPGRIP1Q96KN7 1286 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 CCDC43Q96MW1 224 aaKnown RBP15.49■□□□□ 0.07
LINC00339-211ENST00000641009 ZBP1Q9H171 429 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 RSAD1Q9HA92 442 aa15.49■□□□□ 0.07
LINC00339-211ENST00000641009 DENND4AQ7Z401 1863 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 INO80B-WBP1J3KQ70 363 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 TSPAN1O60635 241 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 CLASP2O75122 1294 aaKnown RBP15.48■□□□□ 0.07
LINC00339-211ENST00000641009 DDHD2O94830 711 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 POMCP01189 267 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 ARL2P36404 184 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 CBX2Q14781 532 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-211ENST00000641009 CASP10Q92851 521 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 FAM122AQ96E09 287 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 KIF2CQ99661 725 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 VN1R3Q9BXE9 311 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 EIF2AQ9BY44 585 aaKnown RBP15.48■□□□□ 0.07
LINC00339-211ENST00000641009 CDH22Q9UJ99 828 aa15.48■□□□□ 0.07
LINC00339-211ENST00000641009 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 USO1O60763 962 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 SPATA31C1P0DKV0 1188 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 NCLP19338 710 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 GLRA2P23416 452 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 MBTD1Q05BQ5 628 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 TFDP1Q14186 410 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 BMS1Q14692 1282 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 ZNF174Q15697 407 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 MAEAQ7L5Y9 396 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 DDX53Q86TM3 631 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 IFNLR1Q8IU57 520 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 SMG8Q8ND04 991 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 LLPHQ9BRT6 129 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 HES2Q9Y543 173 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 IPPQ9Y573 584 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 CNTNAP2Q9UHC6 1331 aa15.47■□□□□ 0.07
LINC00339-211ENST00000641009 MTCL1Q9Y4B5 1905 aaKnown RBP15.47■□□□□ 0.07
LINC00339-211ENST00000641009 MED24O75448 989 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 CENPBP07199 599 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 CTSAP10619 480 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 ITGA4P13612 1032 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 HOXB8P17481 243 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 SP100P23497 879 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 AXLP30530 894 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 AMHR2Q16671 573 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 C8orf34Q49A92 452 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 NOTUMQ6P988 496 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 HFE2Q6ZVN8 426 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 CATSPER3Q86XQ3 398 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 FAM193BQ96PV7 902 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 POLR3FQ9H1D9 316 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 RNF39Q9H2S5 420 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 FOXP1Q9H334 677 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-211ENST00000641009 GPRC5CQ9NQ84 441 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 MYH11P35749 1972 aa15.46■□□□□ 0.07
LINC00339-211ENST00000641009 CARNS1A5YM72 827 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 B4GALT5O43286 388 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 OR52Z1P0C646 297 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 XRCC6P12956 609 aaKnown RBP eCLIP15.46■□□□□ 0.06
LINC00339-211ENST00000641009 ARF4P18085 180 aaPredicted RBP15.46■□□□□ 0.06
LINC00339-211ENST00000641009 POU5F1BQ06416 359 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 PCBP1Q15365 356 aaKnown RBP eCLIP15.46■□□□□ 0.06
LINC00339-211ENST00000641009 POTEGQ6S5H5 508 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 TMEM87AQ8NBN3 555 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 CNNM3Q8NE01 707 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 FBXO18Q8NFZ0 1043 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 EDAQ92838 391 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 CSRNP2Q9H175 543 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 TUFT1Q9NNX1 390 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 KANSL3Q9P2N6 904 aa15.46■□□□□ 0.06
LINC00339-211ENST00000641009 IRAK3Q9Y616 596 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms