RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 DPY19L2P1Q6NXN4 242 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 INTS8Q75QN2 995 aaKnown RBP20.01■□□□□ 0.79
CLN3-263ENST00000637871 FBXO16Q8IX29 292 aaPredicted RBP20.01■□□□□ 0.79
CLN3-263ENST00000637871 KIFAP3Q92845 792 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 CRACR2AQ9BSW2 395 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 DIS3Q9Y2L1 958 aaKnown RBP20.01■□□□□ 0.79
CLN3-263ENST00000637871 H0YCG3 227 aa20■□□□□ 0.79
CLN3-263ENST00000637871 K7ENM7 598 aa20■□□□□ 0.79
CLN3-263ENST00000637871 PMM2O15305 246 aa20■□□□□ 0.79
CLN3-263ENST00000637871 SNAI1O95863 264 aaPredicted RBP20■□□□□ 0.79
CLN3-263ENST00000637871 PLEKP08567 350 aaPredicted RBP20■□□□□ 0.79
CLN3-263ENST00000637871 FERP16591 822 aa20■□□□□ 0.79
CLN3-263ENST00000637871 GRK4P32298 578 aa20■□□□□ 0.79
CLN3-263ENST00000637871 RTP1P59025 263 aa20■□□□□ 0.79
CLN3-263ENST00000637871 ENPEPQ07075 957 aa20■□□□□ 0.79
CLN3-263ENST00000637871 RAPGEF1Q13905 1077 aa20■□□□□ 0.79
CLN3-263ENST00000637871 IFI16Q16666 785 aaKnown RBP20■□□□□ 0.79
CLN3-263ENST00000637871 ZC2HC1CQ53FD0 456 aaPredicted RBP20■□□□□ 0.79
CLN3-263ENST00000637871 OLFML2BQ68BL8 750 aa20■□□□□ 0.79
CLN3-263ENST00000637871 MSANTD4Q8NCY6 345 aa20■□□□□ 0.79
CLN3-263ENST00000637871 NOX5Q96PH1 765 aa20■□□□□ 0.79
CLN3-263ENST00000637871 CDKN2AIPQ9NXV6 580 aaPredicted RBP20■□□□□ 0.79
CLN3-263ENST00000637871 CCDC151A5D8V7 595 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 RCCD1A6NED2 376 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 EXOC3O60645 756 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 IGHA2P01877 340 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 INHAP05111 366 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 TCP1P17987 556 aaKnown RBP19.99■□□□□ 0.79
CLN3-263ENST00000637871 EDNRBP24530 442 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 CASP4P49662 377 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 ITIH3Q06033 890 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 KCNA1Q09470 495 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 MAMDC4Q6UXC1 1216 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 ZNF467Q7Z7K2 595 aaPredicted RBP19.99■□□□□ 0.79
CLN3-263ENST00000637871 SPIRE2Q8WWL2 714 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 PKD2L1Q9P0L9 805 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 RNF14Q9UBS8 474 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 TRIM10Q9UDY6 481 aa19.99■□□□□ 0.79
CLN3-263ENST00000637871 ERLIN1O75477 346 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 HMGCRP04035 888 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 ICAM3P32942 547 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 STAT1P42224 750 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 FMO5P49326 533 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 CLCN6P51797 869 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 NCKAP1LP55160 1127 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 XKR9Q5GH70 373 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 FBXO46Q6PJ61 603 aaPredicted RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 SLAIN1Q8ND83 568 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 MCPH1Q8NEM0 835 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 TRPV1Q8NER1 839 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 HNRNPLLQ8WVV9 542 aaKnown RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 NTPCRQ9BSD7 190 aaKnown RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 MCOLN1Q9GZU1 580 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 GCNT4Q9P109 453 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 ZHX1Q9UKY1 873 aaPredicted RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 INTUQ9ULD6 942 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 SYNGAP1Q96PV0 1343 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 ASB14A6NK59 587 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 SPATA31C2B4DYI2 1134 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 ATP9AO75110 1047 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 PRKAR2AP13861 404 aaKnown RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 SLC9A1P19634 815 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 CACNB2Q08289 660 aaPredicted RBP19.98■□□□□ 0.79
CLN3-263ENST00000637871 IRF2BP2Q7Z5L9 587 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 PXYLP1Q8TE99 480 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 KATNBL1Q9H079 304 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 RAB21Q9UL25 225 aa19.98■□□□□ 0.79
CLN3-263ENST00000637871 EIF3JO75822 258 aaKnown RBP19.97■□□□□ 0.79
CLN3-263ENST00000637871 CCNE2O96020 404 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 KCNA2P16389 499 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 CCND3P30281 292 aaPredicted RBP19.97■□□□□ 0.79
CLN3-263ENST00000637871 JAM2P57087 298 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 BFSP1Q12934 665 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 NAB2Q15742 525 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 STXBP2Q15833 593 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 TMEM63BQ5T3F8 832 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 COL13A1Q5TAT6 717 aaPredicted RBP19.97■□□□□ 0.79
CLN3-263ENST00000637871 MFSD14CQ5VZR4 134 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 MIS18BP1Q6P0N0 1132 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 HAUS6Q7Z4H7 955 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 MORC4Q8TE76 937 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 KCNN1Q92952 543 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 LENG1Q96BZ8 264 aaPredicted RBP19.97■□□□□ 0.79
CLN3-263ENST00000637871 PARD6BQ9BYG5 372 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 STK33Q9BYT3 514 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 ARFGAP3Q9NP61 516 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 PDGFCQ9NRA1 345 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 SLC9A2Q9UBY0 812 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 KIAA1217Q5T5P2 1943 aa19.97■□□□□ 0.79
CLN3-263ENST00000637871 MACROD2A1Z1Q3 448 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 RGS20O76081 388 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 ATP1A1P05023 1023 aaKnown RBP19.96■□□□□ 0.79
CLN3-263ENST00000637871 GFPT1Q06210 699 aaPredicted RBP19.96■□□□□ 0.79
CLN3-263ENST00000637871 CCDC70Q6NSX1 233 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 USP37Q86T82 979 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 XXYLT1Q8NBI6 393 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 UBE2Q2Q8WVN8 375 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 RUBCNQ92622 972 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 JPH1Q9HDC5 661 aaPredicted RBP19.96■□□□□ 0.79
CLN3-263ENST00000637871 SIX2Q9NPC8 291 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms