RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KIAA0319L	Q8IZA0	1049 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	ZNF710	Q8N1W2	664 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	XXYLT1	Q8NBI6	393 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	ZBTB10	Q96DT7	871 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	BICD1	Q96G01	975 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	CCDC113	Q9H0I3	377 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	HDAC6	Q9UBN7	1215 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	AKT3	Q9Y243	479 aa		12.88	□□□□□ -0.35
CLN6-223	ENST00000637823	PES1	O00541	588 aa	Known RBP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	HNRNPDL	O14979	420 aa	Known RBP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	KIAA0391	O15091	583 aa	Known RBP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	EXOC3	O60645	756 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	CABYR	O75952	493 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	AKAP3	O75969	853 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	ASGR1	P07306	291 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	CYP2C9	P11712	490 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	PBX1	P40424	430 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	CASP4	P49662	377 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	LIG4	P49917	911 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	MAPK6	Q16659	721 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	NBPF20	Q3BBV1	942 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	HS1BP3	Q53T59	392 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	FKBP15	Q5T1M5	1219 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	SPECC1L	Q69YQ0	1117 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	CXCL17	Q6UXB2	119 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	ZPBP2	Q6X784	338 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	ZNF410	Q86VK4	478 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	FAM186B	Q8IYM0	893 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	TRIM44	Q96DX7	344 aa	Predicted RBP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	BORCS6	Q96GS4	357 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	TSEN34	Q9BSV6	310 aa	Known RBP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	NDST4	Q9H3R1	872 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	PCIF1	Q9H4Z3	704 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	KIAA1586	Q9HCI6	787 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	HSPBP1	Q9NZL4	362 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	12.87	□□□□□ -0.35
CLN6-223	ENST00000637823	STYXL1	Q9Y6J8	313 aa		12.87	□□□□□ -0.35
CLN6-223	ENST00000637823		A0A1W2PQC6	194 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	TISP43	B9A030	160 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	VTN	P04004	478 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	PRKCB	P05771	671 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	GJB1	P08034	283 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	ADSS	P30520	456 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	GSDMD	P57764	484 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	MCCD1	P59942	119 aa	Predicted RBP	12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	FAM187B	Q17R55	369 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	LHX8	Q68G74	356 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	SLC39A4	Q6P5W5	647 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	NME8	Q8N427	588 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	ARRDC4	Q8NCT1	418 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	POMGNT1	Q8WZA1	660 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	NLRP4	Q96MN2	994 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	CBWD1	Q9BRT8	395 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	MRPL4	Q9BYD3	311 aa	Known RBP	12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	FZD8	Q9H461	694 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	IFT122	Q9HBG6	1241 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	PRMT7	Q9NVM4	692 aa	Predicted RBP	12.86	□□□□□ -0.35
CLN6-223	ENST00000637823	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.86	□□□□□ -0.35	2e-8	■■■□□ 18
CLN6-223	ENST00000637823	ITIH6	Q6UXX5	1313 aa		12.86	□□□□□ -0.35
CLN6-223	ENST00000637823		A0A087WZ62	844 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	INO80B-WBP1	J3KQ70	363 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	ACKR2	O00590	384 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	TREH	O43280	583 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	KRT13	P13646	458 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	GPC3	P51654	580 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	NLRP11	P59045	1033 aa	Known RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	MBTD1	Q05BQ5	628 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	TBX2	Q13207	712 aa	Predicted RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	HIC1	Q14526	733 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	RUFY4	Q6ZNE9	571 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	INTS8	Q75QN2	995 aa	Known RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	CCDC186	Q7Z3E2	898 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	SRGAP1	Q7Z6B7	1085 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	SESTD1	Q86VW0	696 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	NLRP7	Q8WX94	980 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	FBXL18	Q96ME1	805 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	ERGIC2	Q96RQ1	377 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	ACO2	Q99798	780 aa	Known RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	TARS2	Q9BW92	718 aa	Known RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	INO80B	Q9C086	356 aa	Predicted RBP	12.85	□□□□□ -0.35
CLN6-223	ENST00000637823	GTF2IRD1	Q9UHL9	959 aa		12.85	□□□□□ -0.35
CLN6-223	ENST00000637823		A0A0B4J269	797 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	MOXD2P	A6NHM9	499 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	TOM1L1	O75674	476 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	LDHA	P00338	332 aa	Known RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	AFP	P02771	609 aa	Known RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	MYCN	P04198	464 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	ACLY	P53396	1101 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	ZNF200	P98182	395 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	PTPN11	Q06124	597 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	ENPEP	Q07075	957 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	KCNH2	Q12809	1159 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	PRPF4B	Q13523	1007 aa	Known RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	TAF2	Q6P1X5	1199 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	TSHZ1	Q6ZSZ6	1077 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	PPFIBP1	Q86W92	1011 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	GPD1L	Q8N335	351 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	RDH13	Q8NBN7	331 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	SH3TC2	Q8TF17	1288 aa		12.84	□□□□□ -0.35

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