RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 U2AF1L4Q8WU68 220 aaKnown RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 TMEM143Q96AN5 459 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 CCDC127Q96BQ5 260 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 OPTNQ96CV9 577 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 UBE2TQ9NPD8 197 aaPredicted RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 RAB21Q9UL25 225 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 AGTPBP1Q9UPW5 1226 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 CCDC151A5D8V7 595 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 MAPK13O15264 365 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 OATP04181 439 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 PRLRP16471 622 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 EDNRBP24530 442 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 DNA2P51530 1060 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 POLGP54098 1239 aaPredicted RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 VSNL1P62760 191 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 C2orf54Q08AI8 447 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 EMC2Q15006 297 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 BRD3Q15059 726 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 Q3C1V9 767 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 EPC2Q52LR7 807 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 LNX1Q8TBB1 728 aaPredicted RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 POMGNT1Q8WZA1 660 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 IFT74Q96LB3 600 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 POP1Q99575 1024 aaKnown RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 TMEM117Q9H0C3 514 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 SMARCAL1Q9NZC9 954 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 EHD2Q9NZN4 543 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 NENFQ9UMX5 172 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 USP20Q9Y2K6 914 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 FAM170AA1A519 330 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 GRID2IPA4D2P6 1211 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 FOXN3O00409 490 aaPredicted RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 N4BP1O75113 896 aaKnown RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 FARP2O94887 1054 aaPredicted RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 TCP1P17987 556 aaKnown RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 CETN1Q12798 172 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 EAPPQ56P03 285 aaPredicted RBP16.98■□□□□ 0.31
CLN3-251ENST00000636853 TAS1R3Q7RTX0 852 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 GLYCTKQ8IVS8 523 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 OLIG1Q8TAK6 271 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 KCNH4Q9UQ05 1017 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 PCDHGC5Q9Y5F6 944 aa16.98■□□□□ 0.31
CLN3-251ENST00000636853 GSTTP1A0A1W2PQM5 241 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 HNRNPDLO14979 420 aaKnown RBP16.97■□□□□ 0.31
CLN3-251ENST00000636853 MXI1P50539 228 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 MAP2K1Q02750 393 aaPredicted RBP16.97■□□□□ 0.31
CLN3-251ENST00000636853 PPIL2Q13356 520 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 MOGSQ13724 837 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 BICD1Q96G01 975 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 PCYT2Q99447 389 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 RBPJLQ9UBG7 517 aa16.97■□□□□ 0.31
CLN3-251ENST00000636853 PACSIN2Q9UNF0 486 aaPredicted RBP16.97■□□□□ 0.31
CLN3-251ENST00000636853 P4HA2O15460 535 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 SASH3O75995 380 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 TBC1D8O95759 1140 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 ANXA13P27216 316 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 NOP2P46087 812 aaKnown RBP16.96■□□□□ 0.31
CLN3-251ENST00000636853 RTP1P59025 263 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 LY6KQ17RY6 165 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 LONRF2Q1L5Z9 754 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 SLC30A5Q8TAD4 765 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 L3MBTL3Q96JM7 780 aaPredicted RBP16.96■□□□□ 0.31
CLN3-251ENST00000636853 RPGRIP1Q96KN7 1286 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 TOPORSQ9NS56 1045 aaPredicted RBP16.96■□□□□ 0.31
CLN3-251ENST00000636853 ARHGAP28Q9P2N2 729 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 TMCO5BA8MYB1 307 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 PARD3BQ8TEW8 1205 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 ZC3H15Q8WU90 426 aaKnown RBP16.96■□□□□ 0.31
CLN3-251ENST00000636853 KAT5Q92993 513 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 MS4A14Q96JA4 679 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 GOLPH3Q9H4A6 298 aa16.96■□□□□ 0.31
CLN3-251ENST00000636853 IGKV6D-21A0A0A0MT36 114 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 LRRIQ3A6PVS8 624 aaPredicted RBP16.95■□□□□ 0.3
CLN3-251ENST00000636853 BTNL10A8MVZ5 291 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 GGPS1O95749 300 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 H2AFZP0C0S5 128 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 H2AFVQ71UI9 128 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 ASAP3Q8TDY4 903 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 SEMA4DQ92854 862 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 SYT11Q9BT88 431 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 DHX33Q9H6R0 707 aaKnown RBP16.95■□□□□ 0.3
CLN3-251ENST00000636853 ABCB6Q9NP58 842 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 ARIH2O95376 493 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 SLC25A27O95847 323 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 RFX1P22670 979 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 MEI1Q5TIA1 1274 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 CCDC181Q5TID7 509 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 WDR78Q5VTH9 848 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 FGD4Q96M96 766 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 FBXL18Q96ME1 805 aa16.95■□□□□ 0.3
CLN3-251ENST00000636853 SEPT11Q9NVA2 429 aaKnown RBP16.95■□□□□ 0.3
CLN3-251ENST00000636853 GLRA2P23416 452 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 GJA5P36382 358 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 PLA2G4AP47712 749 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 GALCP54803 685 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 NEDD9Q14511 834 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 PTPROQ16827 1216 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 BRDTQ58F21 947 aaPredicted RBP16.94■□□□□ 0.3
CLN3-251ENST00000636853 GPAT2Q6NUI2 795 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 ELMO3Q96BJ8 720 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms