RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 HDAC6Q9UBN7 1215 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 FRMD4BQ9Y2L6 1034 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 TRIM17Q9Y577 477 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 PTCH2Q9Y6C5 1203 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 A0A087WZ62 844 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 GYPCP04921 128 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 APBA1Q02410 837 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 TCERG1LQ5VWI1 586 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 CBWD2Q8IUF1 395 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 POMGNT1Q8WZA1 660 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 SLC35C1Q96A29 364 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 FDXACB1Q9BRP7 624 aaPredicted RBP21.98■■□□□ 1.11
CLN3-250ENST00000636839 CRACR2AQ9BSW2 395 aa21.98■■□□□ 1.11
CLN3-250ENST00000636839 H0YCG3 227 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 TREHO43280 583 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 MSCO60682 206 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 INHAP05111 366 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 TRIM49P0CI25 452 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 TRIM49CP0CI26 452 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 HSPA6P17066 643 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 LIG4P49917 911 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 FXR1P51114 621 aaKnown RBP eCLIP21.97■■□□□ 1.11
CLN3-250ENST00000636839 DLG4P78352 724 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 C12orf56Q8IXR9 622 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 XXYLT1Q8NBI6 393 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 PLEKHO2Q8TD55 490 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 TMEM134Q9H6X4 195 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 KCNG1Q9UIX4 513 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 NRCAMQ92823 1304 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 EPHB6O15197 1021 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 B4GALT5O43286 388 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 ADRB2P07550 413 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 CASP14P31944 242 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 KCNMA1Q12791 1236 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 KCNA10Q16322 511 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 TC2NQ8N9U0 490 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 PXYLP1Q8TE99 480 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 PYCARDQ9ULZ3 195 aa21.97■■□□□ 1.11
CLN3-250ENST00000636839 KAT6AQ92794 2004 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 GNRH1P01148 92 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 PTENP60484 403 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 ADAM17P78536 824 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 FKBP15Q5T1M5 1219 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 MMRN2Q9H8L6 949 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 SIK3Q9Y2K2 1263 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 ITIH6Q6UXX5 1313 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 PHLPP2Q6ZVD8 1323 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 A0A1W2PQC6 194 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 RRN3P2A6NIE6 340 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 INO80B-WBP1J3KQ70 363 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 TMOD1P28289 359 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 NLRP11P59045 1033 aaKnown RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 MBTD1Q05BQ5 628 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 MYBPC2Q14324 1141 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 ZBTB41Q5SVQ8 909 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 CDR2LQ86X02 465 aaPredicted RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 SH3TC2Q8TF17 1288 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 TMEM174Q8WUU8 243 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 KCNN1Q92952 543 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 PCMTD1Q96MG8 357 aaPredicted RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 ERGIC2Q96RQ1 377 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 MKNK1Q9BUB5 465 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 INO80BQ9C086 356 aaPredicted RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 CDHR5Q9HBB8 845 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 METTL14Q9HCE5 456 aaKnown RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 CGNQ9P2M7 1197 aaKnown RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 ANKFY1Q9P2R3 1169 aa21.96■■□□□ 1.11
CLN3-250ENST00000636839 DDX20Q9UHI6 824 aaKnown RBP21.96■■□□□ 1.11
CLN3-250ENST00000636839 MBLAC1A4D2B0 266 aaPredicted RBP21.95■■□□□ 1.1
CLN3-250ENST00000636839 MYCP01106 439 aaPredicted RBP21.95■■□□□ 1.1
CLN3-250ENST00000636839 PRKCBP05771 671 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 ASGR1P07306 291 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 MAP2K1Q02750 393 aaPredicted RBP21.95■■□□□ 1.1
CLN3-250ENST00000636839 TFDP1Q14186 410 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 KIZQ2M2Z5 673 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 NBPF20Q3BBV1 942 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 SEZ6Q53EL9 994 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 ZBTB8OSQ8IWT0 167 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 C17orf53Q8N3J3 647 aaPredicted RBP21.95■■□□□ 1.1
CLN3-250ENST00000636839 KLHDC9Q8NEP7 349 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 MTG1Q9BT17 334 aaPredicted RBP21.95■■□□□ 1.1
CLN3-250ENST00000636839 BEGAINQ9BUH8 593 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 SPC25Q9HBM1 224 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 GINS2Q9Y248 185 aa21.95■■□□□ 1.1
CLN3-250ENST00000636839 CYP2C9P11712 490 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 GRK4P32298 578 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 EFNA5P52803 228 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 GSDMDP57764 484 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 SNRPFP62306 86 aaKnown RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 CCZ1BP86790 482 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 CCZ1P86791 482 aaPredicted RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 SNRNP35Q16560 246 aaKnown RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 CCSAPQ6IQ19 270 aaPredicted RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 PPFIBP1Q86W92 1011 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 C7orf31Q8N865 590 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 FAM84AQ96KN4 292 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 FAM213AQ9BRX8 229 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 FAM207AQ9NSI2 230 aaPredicted RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 ZKSCAN5Q9Y2L8 839 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 TRIP12Q14669 1992 aaPredicted RBP21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms