RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GABBR1Q9UBS5 961 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 RAB23Q9ULC3 237 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 HIP1O00291 1037 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 GDF9O60383 454 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 RXRAP19793 462 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 FSHRP23945 695 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 TARSP26639 723 aaKnown RBP16.44■□□□□ 0.22
CLN3-249ENST00000636685 GNAQP50148 359 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 PLA2G4DQ86XP0 818 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 URGCPQ8TCY9 931 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 CLDN23Q96B33 292 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 PRKD2Q9BZL6 878 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 RXFP1Q9HBX9 757 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 MARCH5Q9NX47 278 aa16.44■□□□□ 0.22
CLN3-249ENST00000636685 PIN4Q9Y237 131 aaKnown RBP16.44■□□□□ 0.22
CLN3-249ENST00000636685 E7EWF7 191 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 FAM86B1E9PN63 330 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 GAS2O43903 313 aaKnown RBP16.43■□□□□ 0.22
CLN3-249ENST00000636685 FAM86B2P0C5J1 330 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 SKIP12755 728 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 GLUD2P49448 558 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 DRP2Q13474 957 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 N4BP2L1Q5TBK1 243 aaPredicted RBP16.43■□□□□ 0.22
CLN3-249ENST00000636685 LAIR1Q6GTX8 287 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 AGMOQ6ZNB7 445 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 NCOA7Q8NI08 942 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 HDAC7Q8WUI4 952 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 FAM193BQ96PV7 902 aaPredicted RBP16.43■□□□□ 0.22
CLN3-249ENST00000636685 TMEM175Q9BSA9 504 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 GCOM2Q9BZD3 368 aaPredicted RBP16.43■□□□□ 0.22
CLN3-249ENST00000636685 SEMA4GQ9NTN9 838 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 SSX2IPQ9Y2D8 614 aa16.43■□□□□ 0.22
CLN3-249ENST00000636685 PRG3Q9Y2Y8 225 aaPredicted RBP16.43■□□□□ 0.22
CLN3-249ENST00000636685 F5P12259 2224 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 IPO5O00410 1097 aaKnown RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 TGM5O43548 720 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 ZNF623O75123 536 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 PSAPP07602 524 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 RETP07949 1114 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 NTHL1P78549 312 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 MTAPQ13126 283 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 TYW1BQ6NUM6 668 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 ZNF746Q6NUN9 644 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 RSPO2Q6UXX9 243 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 PRR23CQ6ZRP0 262 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 PRR23BQ6ZRT6 265 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 TPRG1Q6ZUI0 275 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 NIPA1Q7RTP0 329 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 RAB11FIP4Q86YS3 637 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 GLYCTKQ8IVS8 523 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 FAM167AQ96KS9 214 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 FAM126AQ9BYI3 521 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 PLEKHA4Q9H4M7 779 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 RIC8AQ9NPQ8 531 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 FAM217BQ9NTX9 383 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 ZDHHC7Q9NXF8 308 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 CDH7Q9ULB5 785 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 PCDHA10Q9Y5I2 948 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 ZFP37Q9Y6Q3 630 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 U3KPZ7 1027 aaPredicted RBP16.42■□□□□ 0.22
CLN3-249ENST00000636685 ZZEF1O43149 2961 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 SDK1Q7Z5N4 2213 aa16.42■□□□□ 0.22
CLN3-249ENST00000636685 A0A087WZ62 844 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 ZNF862O60290 1169 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 LRP3O75074 770 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 FOSP01100 380 aaPredicted RBP16.41■□□□□ 0.22
CLN3-249ENST00000636685 POMCP01189 267 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 OATP04181 439 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 TDGF1P13385 188 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 SFPQP23246 707 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLN3-249ENST00000636685 SREBF1P36956 1147 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 RPS9P46781 194 aaKnown RBP16.41■□□□□ 0.22
CLN3-249ENST00000636685 RAB27AP51159 221 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 SHC2P98077 582 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 FZD5Q13467 585 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 WWC2Q6AWC2 1192 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 GRASPQ7Z6J2 395 aaPredicted RBP16.41■□□□□ 0.22
CLN3-249ENST00000636685 PLEKHM2Q8IWE5 1019 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 MB21D2Q8IYB1 491 aaPredicted RBP16.41■□□□□ 0.22
CLN3-249ENST00000636685 B3GALT6Q96L58 329 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 KXD1Q9BQD3 176 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 FDXACB1Q9BRP7 624 aaPredicted RBP16.41■□□□□ 0.22
CLN3-249ENST00000636685 PCDHB2Q9Y5E7 798 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 SPEGQ15772 3267 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 IGF2RP11717 2491 aa16.41■□□□□ 0.22
CLN3-249ENST00000636685 IGLV3-22A0A075B6J6 115 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 F8W810 466 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 EFEMP2O95967 443 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 PROS1P07225 676 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 PFKPQ01813 784 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 DSG1Q02413 1049 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 PTH1RQ03431 593 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 CSRP2Q16527 193 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 MTSS1LQ765P7 747 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 SMAP1Q8IYB5 467 aaPredicted RBP16.4■□□□□ 0.22
CLN3-249ENST00000636685 RNF168Q8IYW5 571 aaPredicted RBP16.4■□□□□ 0.22
CLN3-249ENST00000636685 CELF5Q8N6W0 485 aaKnown RBP16.4■□□□□ 0.22
CLN3-249ENST00000636685 PGBD4Q96DM1 585 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 ZNF577Q9BSK1 485 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 RSAD1Q9HA92 442 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms