RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MRPL10Q7Z7H8 261 aaKnown RBP18.05■□□□□ 0.48
CLN3-246ENST00000636228 C4orf19Q8IY42 314 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 RNF149Q8NC42 400 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 SLC22A17Q8WUG5 538 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 PGBD4Q96DM1 585 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 ORC3Q9UBD5 711 aaPredicted RBP18.05■□□□□ 0.48
CLN3-246ENST00000636228 NR2E1Q9Y466 385 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 STK36Q9NRP7 1315 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 FDPSP14324 419 aaKnown RBP18.04■□□□□ 0.48
CLN3-246ENST00000636228 RFC5P40937 340 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 FOSBP53539 338 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 SPIRE1Q08AE8 756 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 EMC2Q15006 297 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 TMC5Q6UXY8 1006 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 SRGAP1Q7Z6B7 1085 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 TPH2Q8IWU9 490 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 URGCPQ8TCY9 931 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 RSAD1Q9HA92 442 aa18.04■□□□□ 0.48
CLN3-246ENST00000636228 A0A087WWV3 80 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 TBX3O15119 743 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 SLITRK3O94933 977 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 BRD1O95696 1058 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 ASGR2P07307 311 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 MTHFRP42898 656 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 AK2P54819 239 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 TCF15Q12870 199 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 PTPN14Q15678 1187 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 OTUD6AQ7L8S5 288 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 FERMT3Q86UX7 667 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 SMG8Q8ND04 991 aaKnown RBP18.03■□□□□ 0.48
CLN3-246ENST00000636228 CPB2Q96IY4 423 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 RIPOR3Q96MK2 946 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 NECTIN4Q96NY8 510 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 EIF2AQ9BY44 585 aaKnown RBP18.03■□□□□ 0.48
CLN3-246ENST00000636228 RNF39Q9H2S5 420 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 LIMD1Q9UGP4 676 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 DBR1Q9UK59 544 aaKnown RBP18.03■□□□□ 0.48
CLN3-246ENST00000636228 FAN1Q9Y2M0 1017 aa18.03■□□□□ 0.48
CLN3-246ENST00000636228 NRP1O14786 923 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 BAG4O95429 457 aaKnown RBP18.02■□□□□ 0.48
CLN3-246ENST00000636228 LARGE1O95461 756 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 ALDH2P05091 517 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 AVPR2P30518 371 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 ATAT1Q5SQI0 421 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 TAS1R1Q7RTX1 841 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 CABP7Q86V35 215 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 KLHL5Q96PQ7 755 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 FAM193BQ96PV7 902 aaPredicted RBP18.02■□□□□ 0.48
CLN3-246ENST00000636228 MTRQ99707 1265 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 NAP1L4Q99733 375 aaKnown RBP18.02■□□□□ 0.48
CLN3-246ENST00000636228 ZSWIM4Q9H7M6 989 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 XPNPEP1Q9NQW7 623 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 FAM86C1Q9NVL1 165 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 DZANK1Q9NVP4 752 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 HES2Q9Y543 173 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 IRAK3Q9Y616 596 aa18.02■□□□□ 0.48
CLN3-246ENST00000636228 WDR81Q562E7 1941 aa18.02■□□□□ 0.47
CLN3-246ENST00000636228 WNT7AO00755 349 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 C2CD2LO14523 706 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 ASAP2O43150 1006 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 MYBP10242 640 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 ITGA4P13612 1032 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 KLRC2P26717 231 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 KRT2P35908 639 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 PTPN5P54829 565 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 GIT2Q14161 759 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 EXOC8Q8IYI6 725 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 SLFN12Q8IYM2 578 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 TCP11Q8WWU5 503 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 RSPH1Q8WYR4 309 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 TNFRSF25Q93038 417 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 EIF2AK1Q9BQI3 630 aaKnown RBP18.01■□□□□ 0.47
CLN3-246ENST00000636228 MIOSQ9NXC5 875 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 SORCS3Q9UPU3 1222 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 PRG3Q9Y2Y8 225 aaPredicted RBP18.01■□□□□ 0.47
CLN3-246ENST00000636228 PPME1Q9Y570 386 aa18.01■□□□□ 0.47
CLN3-246ENST00000636228 SPDYE4A6NLX3 237 aa18■□□□□ 0.47
CLN3-246ENST00000636228 TSPAN1O60635 241 aa18■□□□□ 0.47
CLN3-246ENST00000636228 CNPP09543 421 aaKnown RBP18■□□□□ 0.47
CLN3-246ENST00000636228 NCLP19338 710 aaKnown RBP18■□□□□ 0.47
CLN3-246ENST00000636228 OR1G1P47890 313 aa18■□□□□ 0.47
CLN3-246ENST00000636228 ME3Q16798 604 aa18■□□□□ 0.47
CLN3-246ENST00000636228 KIAA1841Q6NSI8 718 aa18■□□□□ 0.47
CLN3-246ENST00000636228 TDRD5Q8NAT2 981 aaKnown RBP18■□□□□ 0.47
CLN3-246ENST00000636228 ASAP3Q8TDY4 903 aa18■□□□□ 0.47
CLN3-246ENST00000636228 WASF1Q92558 559 aa18■□□□□ 0.47
CLN3-246ENST00000636228 APOL6Q9BWW8 343 aa18■□□□□ 0.47
CLN3-246ENST00000636228 IPPQ9Y573 584 aa18■□□□□ 0.47
CLN3-246ENST00000636228 CNTNAP2Q9UHC6 1331 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 ZNF318Q5VUA4 2279 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 BTBD18B2RXH4 712 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 F8W810 466 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 INO80B-WBP1J3KQ70 363 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 LILRB3O75022 631 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 ERLIN2O94905 339 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 MLH1P40692 756 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 CLCN4P51793 760 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 PTENP60484 403 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 MTMR3Q13615 1198 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 CALCRLQ16602 461 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms