RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 DUSP9Q99956 384 aaKnown RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 CELF4Q9BZC1 486 aaKnown RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 GCOM2Q9BZD3 368 aaPredicted RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 INO80BQ9C086 356 aaPredicted RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 GBP3Q9H0R5 595 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 TYW1Q9NV66 732 aaKnown RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 EXOC7Q9UPT5 735 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 CDY2AQ9Y6F7 541 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 PDXKO00764 312 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 IKBKBO14920 756 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 CHRNA1P02708 482 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 PRKCBP05771 671 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 DARSP14868 501 aaKnown RBP22.58■■□□□ 1.21
CLN3-245ENST00000636172 EN2P19622 333 aaPredicted RBP22.58■■□□□ 1.21
CLN3-245ENST00000636172 CRYBB1P53674 252 aaPredicted RBP22.58■■□□□ 1.21
CLN3-245ENST00000636172 MGAT3Q09327 533 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 TRIM60Q495X7 471 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 FOXR2Q6PJQ5 311 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 NECAB2Q7Z6G3 386 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 TMEM40Q8WWA1 233 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 TRAF3IP3Q9Y228 551 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 USP20Q9Y2K6 914 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 TRPV2Q9Y5S1 764 aa22.58■■□□□ 1.21
CLN3-245ENST00000636172 TISP43B9A030 160 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 M0QZ92 97 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 FAM187BQ17R55 369 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 UBE2Q1Q7Z7E8 422 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 TSG101Q99816 390 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 AGPAT3Q9NRZ7 376 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 TTLL13PA6NNM8 815 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 ANKRD63C9JTQ0 380 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 HNRNPDLO14979 420 aaKnown RBP22.57■■□□□ 1.2
CLN3-245ENST00000636172 CAND2O75155 1236 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 PIGRP01833 764 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 EIF4BP23588 611 aaKnown RBP22.57■■□□□ 1.2
CLN3-245ENST00000636172 AMHR2Q16671 573 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 SPATA1Q5VX52 437 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 SLC39A4Q6P5W5 647 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 PPP4R3CPQ6ZMV5 832 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 HS2ST1Q7LGA3 356 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 TOX2Q96NM4 488 aa22.57■■□□□ 1.2
CLN3-245ENST00000636172 PRMT7Q9NVM4 692 aaPredicted RBP22.57■■□□□ 1.2
CLN3-245ENST00000636172 BECN2A8MW95 431 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 ACKR2O00590 384 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 TLR3O15455 904 aaKnown RBP22.56■■□□□ 1.2
CLN3-245ENST00000636172 B4GALT5O43286 388 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 CALUO43852 315 aaPredicted RBP22.56■■□□□ 1.2
CLN3-245ENST00000636172 CKBP12277 381 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 TLE2Q04725 743 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 RBL2Q08999 1139 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 EDRF1Q3B7T1 1238 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 FAM26DQ5JW98 314 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 ZNF618Q5T7W0 954 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 GOLGA5Q8TBA6 731 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 BICD1Q96G01 975 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 TARS2Q9BW92 718 aaKnown RBP22.56■■□□□ 1.2
CLN3-245ENST00000636172 MRPL4Q9BYD3 311 aaKnown RBP22.56■■□□□ 1.2
CLN3-245ENST00000636172 NFE2L3Q9Y4A8 694 aa22.56■■□□□ 1.2
CLN3-245ENST00000636172 SMTNL1A8MU46 457 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 FGFR4P22455 802 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 LRRC26Q2I0M4 334 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 TRAF7Q6Q0C0 670 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 CSGALNACT2Q8N6G5 542 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 CAGE1Q8TC20 777 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 PRIMPOLQ96LW4 560 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 HSD3B7Q9H2F3 369 aa22.55■■□□□ 1.2
CLN3-245ENST00000636172 MKI67P46013 3256 aaKnown RBP22.55■■□□□ 1.2
CLN3-245ENST00000636172 CNTNAP2Q9UHC6 1331 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 DCDC2CA8MYV0 355 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 RBAK-RBAKDNI3L0D1 243 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 CLIC2O15247 247 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 TSPAN1O60635 241 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 LIG4P49917 911 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 SNRPFP62306 86 aaKnown RBP22.54■■□□□ 1.2
CLN3-245ENST00000636172 FAAP100Q0VG06 881 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 PRPF4BQ13523 1007 aaKnown RBP22.54■■□□□ 1.2
CLN3-245ENST00000636172 NFIL3Q16649 462 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 ZPBP2Q6X784 338 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 LRRC55Q6ZSA7 311 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 ZC3H3Q8IXZ2 948 aaKnown RBP22.54■■□□□ 1.2
CLN3-245ENST00000636172 EEF2KMTQ96G04 330 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 ACO2Q99798 780 aaKnown RBP22.54■■□□□ 1.2
CLN3-245ENST00000636172 FANCLQ9NW38 375 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 CGNQ9P2M7 1197 aaKnown RBP22.54■■□□□ 1.2
CLN3-245ENST00000636172 ATP11BQ9Y2G3 1177 aa22.54■■□□□ 1.2
CLN3-245ENST00000636172 NR3C1P04150 777 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 ADSSP30520 456 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 TPD52L1Q16890 204 aaPredicted RBP22.53■■□□□ 1.2
CLN3-245ENST00000636172 TSHZ1Q6ZSZ6 1077 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 C12orf56Q8IXR9 622 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 CCDC155Q8N6L0 562 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 CBWD1Q9BRT8 395 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 SRRTQ9BXP5 876 aaKnown RBP22.53■■□□□ 1.2
CLN3-245ENST00000636172 OSBPL7Q9BZF2 842 aa22.53■■□□□ 1.2
CLN3-245ENST00000636172 SAMSN1Q9NSI8 373 aaKnown RBP22.53■■□□□ 1.2
CLN3-245ENST00000636172 FSD2A1L4K1 749 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 ERLIN2O94905 339 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 SFPQP23246 707 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-245ENST00000636172 NR2F2P24468 414 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 FKBP3Q00688 224 aaKnown RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms