RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 KSR1Q8IVT5 923 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 LEO1Q8WVC0 666 aaPredicted RBP20.06■□□□□ 0.8
CLN3-243ENST00000635973 GCOM2Q9BZD3 368 aaPredicted RBP20.06■□□□□ 0.8
CLN3-243ENST00000635973 ADAMTS10Q9H324 1103 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 RCOR1Q9UKL0 485 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 C9IYK1 514 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 ASAP2O43150 1006 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 ITGB1P05556 798 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 EIF4BP23588 611 aaKnown RBP20.05■□□□□ 0.8
CLN3-243ENST00000635973 LAMTOR4Q0VGL1 99 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 TFDP1Q14186 410 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 DHX8Q14562 1220 aaKnown RBP20.05■□□□□ 0.8
CLN3-243ENST00000635973 MXD4Q14582 209 aaPredicted RBP20.05■□□□□ 0.8
CLN3-243ENST00000635973 RRAGBQ5VZM2 374 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 CCDC73Q6ZRK6 1079 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 FAM178BQ8IXR5 827 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 ABI1Q8IZP0 508 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 GJD3Q8N144 294 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 MICAL1Q8TDZ2 1067 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 POF1BQ8WVV4 589 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 EPHX3Q9H6B9 360 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 GPRC5CQ9NQ84 441 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 TMEM161AQ9NX61 479 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 CHMP5Q9NZZ3 219 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 PCDHA7Q9UN72 937 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 PLXNA4Q9HCM2 1894 aa20.05■□□□□ 0.8
CLN3-243ENST00000635973 A0A087WZ62 844 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 HOXA2O43364 376 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 STAT6P42226 847 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 HYAL1Q12794 435 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 SYT2Q8N9I0 419 aaPredicted RBP20.04■□□□□ 0.8
CLN3-243ENST00000635973 RNF149Q8NC42 400 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 SPPL3Q8TCT6 385 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 ASAP3Q8TDY4 903 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 RAD54LQ92698 747 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 FDXACB1Q9BRP7 624 aaPredicted RBP20.04■□□□□ 0.8
CLN3-243ENST00000635973 RUSC1Q9BVN2 902 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 ELAC1Q9H777 363 aaKnown RBP20.04■□□□□ 0.8
CLN3-243ENST00000635973 FAM13BQ9NYF5 915 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 STK17AQ9UEE5 414 aa20.04■□□□□ 0.8
CLN3-243ENST00000635973 DARSP14868 501 aaKnown RBP20.03■□□□□ 0.8
CLN3-243ENST00000635973 ARL2P36404 184 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 PHKA2P46019 1235 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 SLC12A3P55017 1021 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 CSPP1Q1MSJ5 1256 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 AXDND1Q5T1B0 1012 aaPredicted RBP20.03■□□□□ 0.8
CLN3-243ENST00000635973 RINT1Q6NUQ1 792 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 THNSL1Q8IYQ7 743 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 PDILTQ8N807 584 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 LARP4BQ92615 738 aaKnown RBP20.03■□□□□ 0.8
CLN3-243ENST00000635973 KIFAP3Q92845 792 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 PANK2Q9BZ23 570 aa20.03■□□□□ 0.8
CLN3-243ENST00000635973 INO80BQ9C086 356 aaPredicted RBP20.03■□□□□ 0.8
CLN3-243ENST00000635973 LRRIQ4A6NIV6 560 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 KRT18P05783 430 aaKnown RBP20.02■□□□□ 0.8
CLN3-243ENST00000635973 FGFR1P11362 822 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 SFPQP23246 707 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN3-243ENST00000635973 GLRA2P23416 452 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 NDUFV1P49821 464 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 FAM189BP81408 668 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 RAD51AP2Q09MP3 1159 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 MCM6Q14566 821 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 COL19A1Q14993 1142 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 CLUL1Q15846 466 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 TPRNQ4KMQ1 711 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 SHC4Q6S5L8 630 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 GPBP1Q86WP2 473 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 RNF169Q8NCN4 708 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 IFT74Q96LB3 600 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 DRC1Q96MC2 740 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 IPO9Q96P70 1041 aaKnown RBP20.02■□□□□ 0.8
CLN3-243ENST00000635973 TIPINQ9BVW5 301 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 GDPD2Q9HCC8 539 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 TYW1Q9NV66 732 aaKnown RBP20.02■□□□□ 0.8
CLN3-243ENST00000635973 KCND2Q9NZV8 630 aa20.02■□□□□ 0.8
CLN3-243ENST00000635973 HIP1RO75146 1068 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 CSDE1O75534 798 aaKnown RBP20.01■□□□□ 0.79
CLN3-243ENST00000635973 LAG3P18627 525 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 DNAJB1P25685 340 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 PLA2G5P39877 138 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 UBE3AQ05086 875 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 CAPSQ13938 189 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 DSC3Q14574 896 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 CTC1Q2NKJ3 1217 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 TMEM31Q5JXX7 168 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 KHSRPQ92945 711 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLN3-243ENST00000635973 TMEM117Q9H0C3 514 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 BLOC1S4Q9NUP1 217 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 DACT1Q9NYF0 836 aa20.01■□□□□ 0.79
CLN3-243ENST00000635973 FGFR4P22455 802 aa20■□□□□ 0.79
CLN3-243ENST00000635973 GUCY2CP25092 1073 aa20■□□□□ 0.79
CLN3-243ENST00000635973 GTF2F1P35269 517 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-243ENST00000635973 LTBRP36941 435 aa20■□□□□ 0.79
CLN3-243ENST00000635973 CAMK1Q14012 370 aa20■□□□□ 0.79
CLN3-243ENST00000635973 PPP2R5AQ15172 486 aa20■□□□□ 0.79
CLN3-243ENST00000635973 RESP18Q5W5W9 173 aa20■□□□□ 0.79
CLN3-243ENST00000635973 C1orf186Q6ZWK4 172 aa20■□□□□ 0.79
CLN3-243ENST00000635973 CATSPER4Q7RTX7 472 aa20■□□□□ 0.79
CLN3-243ENST00000635973 SRGAP1Q7Z6B7 1085 aa20■□□□□ 0.79
CLN3-243ENST00000635973 RBM23Q86U06 439 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms