RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 DSC3Q14574 896 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 TWF2Q6IBS0 349 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 HAUS6Q7Z4H7 955 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 SLC9A7Q96T83 725 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 CCDC113Q9H0I3 377 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 TMEM134Q9H6X4 195 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 RNF216Q9NWF9 866 aaPredicted RBP21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 HOOK1Q9UJC3 728 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 TTC3P53804 2025 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 FRMD3A2A2Y4 597 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 RBAK-RBAKDNI3L0D1 243 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 ACKR2O00590 384 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 MGEA5O60502 916 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 ATP2A2P16615 1042 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 PRPF4BQ13523 1007 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 CUL4BQ13620 913 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 AMHR2Q16671 573 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 NOTUMQ6P988 496 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 UNC13DQ70J99 1090 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 SLC24A5Q71RS6 500 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 MYOCDQ8IZQ8 938 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 TMEM161BQ8NDZ6 487 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 CCDC51Q96ER9 411 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 TIGD1Q96MW7 591 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 MRPL44Q9H9J2 332 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 RGS18Q9NS28 235 aa21.03■□□□□ 0.96
SQSTM1-216ENST00000626660 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 PVALEFA0A1B0GWK0 134 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 NR1I2O75469 434 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 MAPTP10636 758 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 CASP1P29466 404 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 COASYQ13057 564 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 RTN4RL1Q86UN2 441 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 PHOSPHO2Q8TCD6 241 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 LINC01599Q8WXQ3 324 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 CCDC47Q96A33 483 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 OLFML3Q9NRN5 406 aa21.02■□□□□ 0.96
SQSTM1-216ENST00000626660 CNTNAP2Q9UHC6 1331 aa21.02■□□□□ 0.95
SQSTM1-216ENST00000626660 B4GALT5O43286 388 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 STAG3L1P0CL83 205 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 ARF4P18085 180 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 IBSPP21815 317 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 NMT1P30419 496 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 HOXA11P31270 313 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 SARSP49591 514 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 RAB27AP51159 221 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 DEFB103AP81534 67 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 CPB2Q96IY4 423 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 MRPL4Q9BYD3 311 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 EXOC1Q9NV70 894 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 TBC1D7Q9P0N9 293 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 LRFN2Q9ULH4 789 aa21.01■□□□□ 0.95
SQSTM1-216ENST00000626660 C9IYK1 514 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 N4BP3O15049 544 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 SKIP12755 728 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 ALCAMQ13740 583 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 POSTNQ15063 836 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 STXBP4Q6ZWJ1 553 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 APBB1IPQ7Z5R6 666 aaPredicted RBP21■□□□□ 0.95
SQSTM1-216ENST00000626660 KCNN1Q92952 543 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 HVCN1Q96D96 273 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 ZBED2Q9BTP6 218 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 ST6GALNAC4Q9H4F1 302 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 LMBRD1Q9NUN5 540 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 PCDHB13Q9Y5F0 798 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 PTPRSQ13332 1948 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 SZT2Q5T011 3432 aa21■□□□□ 0.95
SQSTM1-216ENST00000626660 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 UPP2O95045 317 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 GCNT3O95395 438 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 GTF2BQ00403 316 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 FAM26FQ5R3K3 315 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 SLC27A1Q6PCB7 646 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 TAS1R3Q7RTX0 852 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 ZNF720Q7Z2F6 126 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 NPAS4Q8IUM7 802 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 HERC6Q8IVU3 1022 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 BICD1Q96G01 975 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 FIZ1Q96SL8 496 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 ADPGKQ9BRR6 497 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 TRAIPQ9BWF2 469 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 TRIM6Q9C030 488 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 TBX20Q9UMR3 447 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 PCDHB7Q9Y5E2 793 aa20.99■□□□□ 0.95
SQSTM1-216ENST00000626660 A0A0U1RQF3 1178 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 A0A1B0GUA9 196 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 RPN1P04843 607 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 PRR29P0C7W0 189 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 FAM189BP81408 668 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 DPYDQ12882 1025 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 NT5DC1Q5TFE4 455 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 ATF7IP2Q5U623 682 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 FAM117BQ6P1L5 589 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 TOP1MTQ969P6 601 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 FAM105AQ9NUU6 356 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 TMEM161AQ9NX61 479 aa20.98■□□□□ 0.95
SQSTM1-216ENST00000626660 SMC2O95347 1197 aa20.97■□□□□ 0.95
SQSTM1-216ENST00000626660 PNOCQ13519 176 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms