RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CCDC148Q8NFR7 591 aa16.48■□□□□ 0.23
PNKP-218ENST00000625299 TBC1D17Q9HA65 648 aa16.48■□□□□ 0.23
PNKP-218ENST00000625299 VPS54Q9P1Q0 977 aa16.48■□□□□ 0.23
PNKP-218ENST00000625299 WNT16Q9UBV4 365 aa16.48■□□□□ 0.23
PNKP-218ENST00000625299 DNAH14Q0VDD8 3507 aa16.48■□□□□ 0.23
PNKP-218ENST00000625299 CLUHO75153 1309 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 IGKV6-21A0A0C4DH24 114 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 MED19A0JLT2 244 aaPredicted RBP16.47■□□□□ 0.23
PNKP-218ENST00000625299 NRP1O14786 923 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 PRPF3O43395 683 aaKnown RBP16.47■□□□□ 0.23
PNKP-218ENST00000625299 RFPL2O75678 378 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 ADH1AP07327 375 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 DCNP07585 359 aaKnown RBP16.47■□□□□ 0.23
PNKP-218ENST00000625299 KRT32Q14532 448 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 ELMSAN1Q6PJG2 1045 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 Q6ZUG5 572 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 DGLUCYQ7Z3D6 616 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 MYADMQ96S97 322 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 CEP89Q96ST8 783 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 TMEM175Q9BSA9 504 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 WDR6Q9NNW5 1121 aaKnown RBP16.47■□□□□ 0.23
PNKP-218ENST00000625299 AGPAT5Q9NUQ2 364 aa16.47■□□□□ 0.23
PNKP-218ENST00000625299 TEX28O15482 410 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 EDIL3O43854 480 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 LILRB3O75022 631 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 MAFO75444 373 aaPredicted RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 PSMD10O75832 226 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 STBD1O95210 358 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 GLUD1P00367 558 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SOD2P04179 222 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SPATA31D3P0C874 917 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 OR1G1P47890 313 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 USP11P51784 963 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SPATA31D4Q6ZUB0 917 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 GET4Q7L5D6 327 aaPredicted RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 TAS1R1Q7RTX1 841 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SLC44A3Q8N4M1 653 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 ST13P5Q8NFI4 369 aaPredicted RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 CMASQ8NFW8 434 aaPredicted RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 RDM1Q8NG50 284 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 GPR152Q8TDT2 470 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 TBCKQ8TEA7 893 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SMG7Q92540 1137 aaKnown RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 BRF1Q92994 677 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 RPS6KC1Q96S38 1066 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 HERC2P3Q9BVR0 1158 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SLC26A6Q9BXS9 759 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 SEMA4AQ9H3S1 761 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 PIDD1Q9HB75 910 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 BMP2KQ9NSY1 1161 aaPredicted RBP16.46■□□□□ 0.23
PNKP-218ENST00000625299 KANSL3Q9P2N6 904 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 COL4A3BPQ9Y5P4 624 aa16.46■□□□□ 0.23
PNKP-218ENST00000625299 DOCK8Q8NF50 2099 aa16.46■□□□□ 0.22
PNKP-218ENST00000625299 CNTNAP2Q9UHC6 1331 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 TDP2O95551 362 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 HMGB1P09429 215 aaKnown RBP16.45■□□□□ 0.22
PNKP-218ENST00000625299 SRGAP2CP0DJJ0 459 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 SRFP11831 508 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 GLUD2P49448 558 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 NLRP5P59047 1200 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 JPH2Q9BR39 696 aaPredicted RBP16.45■□□□□ 0.22
PNKP-218ENST00000625299 IFT122Q9HBG6 1241 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 MARCH5Q9NX47 278 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 EPS15L1Q9UBC2 864 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 DPP7Q9UHL4 492 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 SSX2IPQ9Y2D8 614 aa16.45■□□□□ 0.22
PNKP-218ENST00000625299 Q4G0T1 1027 aa16.44■□□□□ 0.22
PNKP-218ENST00000625299 ZC3H14Q6PJT7 736 aaKnown RBP16.44■□□□□ 0.22
PNKP-218ENST00000625299 ANO5Q75V66 913 aa16.44■□□□□ 0.22
PNKP-218ENST00000625299 MRPL10Q7Z7H8 261 aaKnown RBP16.44■□□□□ 0.22
PNKP-218ENST00000625299 PALB2Q86YC2 1186 aa16.44■□□□□ 0.22
PNKP-218ENST00000625299 GLYCTKQ8IVS8 523 aa16.44■□□□□ 0.22
PNKP-218ENST00000625299 ARHGEF3Q9NR81 526 aa16.44■□□□□ 0.22
PNKP-218ENST00000625299 FRYLO94915 3013 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 ITGA4P13612 1032 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 NPEPPSP55786 919 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 PSMC5P62195 406 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 TSGA10IPQ3SY00 556 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 UBXN11Q5T124 520 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 SLC7A3Q8WY07 619 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 TMEM143Q96AN5 459 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 B3GALT6Q96L58 329 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 JAKMIP1Q96N16 626 aaKnown RBP16.43■□□□□ 0.22
PNKP-218ENST00000625299 RNF26Q9BY78 433 aaPredicted RBP16.43■□□□□ 0.22
PNKP-218ENST00000625299 MINDY3Q9H8M7 445 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 SIT1Q9Y3P8 196 aa16.43■□□□□ 0.22
PNKP-218ENST00000625299 TDRD15B5MCY1 1934 aaKnown RBP16.43■□□□□ 0.22
PNKP-218ENST00000625299 F8W810 466 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 SP9P0CG40 484 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 NCLP19338 710 aaKnown RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 MLH1P40692 756 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 CYP26C1Q6V0L0 522 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 SRGAP1Q7Z6B7 1085 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 COLGALT2Q8IYK4 626 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 DCLK2Q8N568 766 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 PRPF31Q8WWY3 499 aaKnown RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 PSPC1Q8WXF1 523 aaKnown RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 NXPE3Q969Y0 559 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 ZNF707Q96C28 371 aaPredicted RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 CEP170P1Q96L14 293 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms