RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 USP40Q9NVE5 1235 aa21.1■□□□□ 0.97
PDLIM3-212ENST00000620787 CTTNBP2NLQ9P2B4 639 aa21.1■□□□□ 0.97
PDLIM3-212ENST00000620787 RARGP13631 454 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 PEX5P50542 639 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 SLMAPQ14BN4 828 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 PPP2R5AQ15172 486 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 SHROOM1Q2M3G4 852 aaPredicted RBP21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 MFSD5Q6N075 450 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 CRELD2Q6UXH1 353 aaPredicted RBP21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 TBC1D1Q86TI0 1168 aaPredicted RBP21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 LMO3Q8TAP4 145 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 ART4Q93070 314 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 DBR1Q9UK59 544 aaKnown RBP21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 SNX3O60493 162 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 GGPS1O95749 300 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 PSEN1P49768 467 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 CRY2Q49AN0 593 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 CCDC38Q502W7 563 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 SLFN13Q68D06 897 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 AGPAT3Q9NRZ7 376 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 PFASO15067 1338 aa21.09■□□□□ 0.97
PDLIM3-212ENST00000620787 TMEM110-MUSTN1A8MSY1 372 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 UBE4BO95155 1302 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 FTLP02792 175 aaPredicted RBP21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 CLTAP09496 248 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 EEF2P13639 858 aaKnown RBP21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 EXOC3L1Q86VI1 746 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 CERKQ8TCT0 537 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 PARVGQ9HBI0 331 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 CCNL1Q9UK58 526 aaPredicted RBP21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 FRMD4BQ9Y2L6 1034 aa21.08■□□□□ 0.97
PDLIM3-212ENST00000620787 TCRBV7S2A1N4TA0A589 114 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 UBOX5O94941 541 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 FOSP01100 380 aaPredicted RBP21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 TAL1P17542 331 aaPredicted RBP21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 CYP1B1Q16678 543 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 TAOK1Q7L7X3 1001 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 CERS5Q8N5B7 392 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 MKL1Q969V6 931 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 HSD17B14Q9BPX1 270 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 AMNQ9BXJ7 453 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 DNAJC18Q9H819 358 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 EBF2Q9HAK2 575 aa21.08■□□□□ 0.96
PDLIM3-212ENST00000620787 HLA-DOAP06340 250 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 COMTP21964 271 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 NCALDP61601 193 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 ZNF568Q3ZCX4 644 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 USH1GQ495M9 461 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 SEL1L2Q5TEA6 688 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 ZNF720Q7Z2F6 126 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 PNMA8AQ86V59 439 aaPredicted RBP21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 KCTD17Q8N5Z5 321 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 STAMBPL1Q96FJ0 436 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 RPS6KC1Q96S38 1066 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 CCDC113Q9H0I3 377 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 ZBTB39O15060 712 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 RARAP10276 462 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 RFX1P22670 979 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 COILP38432 576 aaPredicted RBP21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 PDE6CP51160 858 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 ZNF268Q14587 947 aaPredicted RBP21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 FAM98CQ17RN3 349 aaKnown RBP21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 SLC30A10Q6XR72 485 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 HS2ST1Q7LGA3 356 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 CD101Q93033 1021 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 CCDC17Q96LX7 622 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 CD2APQ9Y5K6 639 aa21.07■□□□□ 0.96
PDLIM3-212ENST00000620787 SMCHD1A6NHR9 2005 aa21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 PYGMP11217 842 aa21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 CLNS1AP54105 237 aaKnown RBP21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 BFSP1Q12934 665 aa21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 SIX1Q15475 284 aaPredicted RBP21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 CDC42EP5Q6NZY7 148 aa21.06■□□□□ 0.96
PDLIM3-212ENST00000620787 C6orf229H3BNL8 230 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 SLITRK3O94933 977 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 NQO1P15559 274 aaKnown RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 ZNF131P52739 623 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 KCNJ2P63252 427 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 GPC5P78333 572 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 MESDQ14696 234 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 CRYMQ14894 314 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 GALNTL6Q49A17 601 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 CYFIP1Q7L576 1253 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 FBXO11Q86XK2 927 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 CCDC105Q8IYK2 499 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 DYDC2Q96IM9 177 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 RUNDC3BQ96NL0 473 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 ROPN1BQ9BZX4 212 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 ROPN1Q9HAT0 212 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 TUFT1Q9NNX1 390 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 NYAP2Q9P242 653 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 CHORDC1Q9UHD1 332 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 PTPN22Q9Y2R2 807 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 USP15Q9Y4E8 981 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 LRRC37AA6NMS7 1700 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 IGLV3-22A0A075B6J6 115 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 RPSAP08865 295 aaKnown RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 ALADP13716 330 aa21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 SLC13A5Q86YT5 568 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-212ENST00000620787 ARHGEF19Q8IW93 802 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms