RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FAM151AQ8WW52 585 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 DACT3Q96B18 629 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TNIP3Q96KP6 325 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 MTA3Q9BTC8 594 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 NUP85Q9BW27 656 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 MAGEB5Q9BZ81 275 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TMEM39BQ9GZU3 492 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PYCARDQ9ULZ3 195 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 SUN1O94901 812 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 FBXW4P57775 412 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TTC13Q8NBP0 860 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TMEM143Q96AN5 459 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 EPS15L1Q9UBC2 864 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PP2D1A8MPX8 630 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 ALDH1A1P00352 501 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 FGGP02679 453 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PRCPP42785 496 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 FOXD4Q12950 439 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 FAM102AQ5T9C2 384 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 SH3TC2Q8TF17 1288 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PBXIP1Q96AQ6 731 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 SH3KBP1Q96B97 665 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 ITM2BQ9Y287 266 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 DIS3Q9Y2L1 958 aaKnown RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 WDR91A4D1P6 747 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 NDUFB10O96000 172 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TTC23LQ6PF05 361 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 ANKRD13AQ8IZ07 590 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PGBD3Q8N328 593 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 DDX27Q96GQ7 796 aaKnown RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 IP6K2Q9UHH9 426 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 TSR3Q9UJK0 312 aaKnown RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 ZC3H4Q9UPT8 1303 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 TMEM247A6NEH6 219 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 NCF2P19878 526 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 TAS2R42Q7RTR8 314 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 HAUS6Q7Z4H7 955 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SAYSD1Q9NPB0 183 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 LSM7Q9UK45 103 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SRGAP2O75044 1071 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 HADHAP40939 763 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ATG9AQ7Z3C6 839 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 LRRC43Q8N309 656 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 CYP26B1Q9NR63 512 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 PCDHB7Q9Y5E2 793 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 NPHP3-ACAD11A0A0J9YXS1 232 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 H3BRJ5 948 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 PRRG1O14668 218 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 CPT1AP50416 773 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 GTF2A2P52657 109 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 CLNS1AP54105 237 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 KIF19Q2TAC6 998 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 LMBRD2Q68DH5 695 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 FBXL13Q8NEE6 735 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF564Q8TBZ8 553 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SCG3Q8WXD2 468 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ZBTB18Q99592 522 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 DEFB129Q9H1M3 183 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 FAN1Q9Y2M0 1017 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 EYA4O95677 639 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SULT1E1P49888 294 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ARL4CP56559 192 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 CDK17Q00537 523 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF543Q08ER8 600 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 DHX35Q9H5Z1 703 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 AFF4Q9UHB7 1163 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 LRRC53A6NM62 1247 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 MFAP3LO75121 409 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 PALMO75781 387 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ITGA4P13612 1032 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 TRIM28Q13263 835 aaKnown RBP12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ITPK1Q13572 414 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF235Q14590 738 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 XKR3Q5GH77 459 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 RASSF3Q86WH2 238 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SLC16A10Q8TF71 515 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 SEPT1Q8WYJ6 367 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 BCL2L12Q9HB09 334 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 MED4Q9NPJ6 270 aa12.12□□□□□ -0.47
CLIP1-219ENST00000620786 OPHN1O60890 802 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ZRANB2O95218 330 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 IRF1P10914 325 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ST8SIA6P61647 398 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 HEATR6Q6AI08 1181 aaKnown RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 SEPT5Q99719 369 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 PDE11AQ9HCR9 933 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 NYAP2Q9P242 653 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 CNTNAP4Q9C0A0 1308 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 A0A1B0GUA9 196 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 MYBL1P10243 752 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 OCRLQ01968 901 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 RNF180Q86T96 592 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 PPWD1Q96BP3 646 aaKnown RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ZMYND12Q9H0C1 365 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 VCPKMTQ9H867 229 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 SLC4A7Q9Y6M7 1214 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 CTNND1O60716 968 aaKnown RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 HSPA4LO95757 839 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 DRAP1Q14919 205 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms