RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 CEP89Q96ST8 783 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 FAM213AQ9BRX8 229 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 HAPLN2Q9GZV7 340 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 HAUS4Q9H6D7 363 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 METTL14Q9HCE5 456 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 ACP6Q9NPH0 428 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 RYDENQ9NUL5 291 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 CEP72Q9P209 647 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 ANKFY1Q9P2R3 1169 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 TRPC6Q9Y210 931 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 SLC16A3O15427 465 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 SNAI1O95863 264 aaPredicted RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 TGFB3P10600 412 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 VAMP7P51809 220 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 SNRNP35Q16560 246 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 PTPROQ16827 1216 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 ZNF792Q3KQV3 632 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 C1orf220Q5T0J3 134 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 IQCEQ6IPM2 695 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 TAPT1Q6NXT6 567 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 KAT5Q92993 513 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 IFT74Q96LB3 600 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 TARS2Q9BW92 718 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 PACSIN1Q9BY11 444 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 DHX33Q9H6R0 707 aaKnown RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 PLSCR2Q9NRY7 297 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 SALL4Q9UJQ4 1053 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 LAMA3Q16787 3333 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 ZBTB42B2RXF5 422 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 KIF5CO60282 957 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 SRGAP2O75044 1071 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 GFPT2O94808 682 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 MATR3P43243 847 aaKnown RBP eCLIP8.49□□□□□ -1.05
NEK3-207ENST00000617054 PSEN1P49768 467 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 PTK2Q05397 1052 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 PHLDB3Q6NSJ2 640 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 RHPN2Q8IUC4 686 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 AFG1LQ8WV93 481 aa8.49□□□□□ -1.05
NEK3-207ENST00000617054 ZHX1Q9UKY1 873 aaPredicted RBP8.49□□□□□ -1.05
NEK3-207ENST00000617054 A0A087X0T9 212 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 TMCO5BA8MYB1 307 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 BUB1O43683 1085 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CALCAP01258 141 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 FAM228BP0C875 321 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CYLC1P35663 651 aaPredicted RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 CLCN3P51790 818 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CCNA1P78396 465 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 KLHL30Q0D2K2 578 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 TTLL4Q14679 1199 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 PLCB4Q15147 1175 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CCL14Q16627 93 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 MAMDC4Q6UXC1 1216 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 ZBTB33Q86T24 672 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 MAP4K3Q8IVH8 894 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 TMEM130Q8N3G9 435 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 MCPH1Q8NEM0 835 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 JAKMIP2Q96AA8 810 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 PSMB7Q99436 277 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 NTPCRQ9BSD7 190 aaKnown RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 PI4K2AQ9BTU6 479 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 TRAIPQ9BWF2 469 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CARD6Q9BX69 1037 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 IFIH1Q9BYX4 1025 aaKnown RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 NRBP2Q9NSY0 501 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 PCDHA13Q9Y5I0 950 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 K7ERI5 159 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 DKC1O60832 514 aaKnown RBP eCLIP8.48□□□□□ -1.05
NEK3-207ENST00000617054 KRT13P13646 458 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CAPSQ13938 189 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 SPA17Q15506 151 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 IRF2BP2Q7Z5L9 587 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 ANKRD23Q86SG2 305 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 DEPTORQ8TB45 409 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 NLRP4Q96MN2 994 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 DNAJC12Q9UKB3 198 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 EVPLQ92817 2033 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 CYP2C19P33261 490 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 USP8P40818 1118 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 LIG4P49917 911 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 DNA2P51530 1060 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 NLRP11P59045 1033 aaKnown RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 OSTNP61366 133 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 MYL7Q01449 175 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 TARBP2Q15633 366 aaKnown RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 ERCC6LQ2NKX8 1250 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 FAM160B1Q5W0V3 765 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 ZNF571Q7Z3V5 609 aaPredicted RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 SAPCD2Q86UD0 394 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 ARHGEF19Q8IW93 802 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 ZNF710Q8N1W2 664 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 RNF149Q8NC42 400 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 SEMA4DQ92854 862 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 UBE2TQ9NPD8 197 aaPredicted RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 FLRT1Q9NZU1 646 aa8.48□□□□□ -1.05
NEK3-207ENST00000617054 PUF60Q9UHX1 559 aaKnown RBP8.48□□□□□ -1.05
NEK3-207ENST00000617054 EIF3CLB5ME19 914 aaKnown RBP8.47□□□□□ -1.05
NEK3-207ENST00000617054 IPO7O95373 1038 aaKnown RBP8.47□□□□□ -1.05
NEK3-207ENST00000617054 MOCS3O95396 460 aa8.47□□□□□ -1.05
NEK3-207ENST00000617054 SMPD1P17405 629 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms