RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 RNF34Q969K3 372 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 TLR3O15455 904 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 FAM58BPP0C7Q3 252 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 PRLRP16471 622 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SF3A3Q12874 501 aaKnown RBP eCLIP9.29□□□□□ -0.929e-7■■■□□ 18.2
TTC28-208ENST00000612946 KIF19Q2TAC6 998 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 CYFIP1Q7L576 1253 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 INPP5DQ92835 1189 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 FAR2Q96K12 515 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 NYXQ9GZU5 481 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 HBS1LQ9Y450 684 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 SMCO2A6NFE2 343 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 ANGPT2O15123 496 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 NBNO60934 754 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SLC1A1P43005 524 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 CCZ1BP86790 482 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 CCZ1P86791 482 aaPredicted RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 STAG2Q8N3U4 1231 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SSU72P8A0A1W2PR75 194 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 F8VZ95 297 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 C21orf59P57076 290 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SYN2Q92777 582 aaPredicted RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 WDR12Q9GZL7 423 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 EURLQ9NYK6 297 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 A0A1B0GTH6 734 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 PDZK1P1A8MUH7 402 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 B4E1Z4 1266 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 TBC1D12O60347 775 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 VCPP55072 806 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 NR5A1Q13285 461 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SFR1Q86XK3 245 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 NSUN7Q8NE18 718 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 DEPDC7Q96QD5 511 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 PLGRKTQ9HBL7 147 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 SMARCAL1Q9NZC9 954 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 MYO18AQ92614 2054 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 CPA1P15085 419 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 TMEM63BQ5T3F8 832 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 ALKBH5Q6P6C2 394 aaKnown RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 FAM47EQ6ZV65 393 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 A0A087WXM4 84 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 TULP2O00295 520 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 ITGB3BPQ13352 177 aaPredicted RBP9.29□□□□□ -0.92
TTC28-208ENST00000612946 WAPLQ7Z5K2 1190 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 PACS2Q86VP3 889 aa9.29□□□□□ -0.92
TTC28-208ENST00000612946 BIRC5O15392 142 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 MED26O95402 600 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 FOSP01100 380 aaPredicted RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 CXCR5P32302 372 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 TTC17Q96AE7 1141 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ZSCAN10Q96SZ4 725 aaPredicted RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 EMILIN1Q9Y6C2 1016 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 WDR62O43379 1518 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 SAGE2PA6NJ88 616 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 MBD4O95243 580 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 IL1RL1Q01638 556 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PTGDRQ13258 359 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 DNAJC24Q6P3W2 148 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 MAP3K15Q6ZN16 1313 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 GSTT1P30711 240 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 SKIV2L2P42285 1042 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 RAB25P57735 213 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PPIDQ08752 370 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 TTC39CQ8N584 583 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 HLA-DPA1P20036 260 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 EPHB1P54762 984 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 SURF1Q15526 300 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 BSPRYQ5W0U4 402 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 TRIM67Q6ZTA4 783 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ENKURQ8TC29 256 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ATXN2LQ8WWM7 1075 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 PGM3O95394 542 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PDIA3P30101 505 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 CTTNQ14247 550 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 ARMCX5Q6P1M9 558 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 RFX6Q8HWS3 928 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 HACE1Q8IYU2 909 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 GRPEL2Q8TAA5 225 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 CYGBQ8WWM9 190 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 NEUROG2Q9H2A3 272 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 SNAPC5O75971 98 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ITGA1P56199 1179 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PLEKHA7Q6IQ23 1121 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 TTC27Q6P3X3 843 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 AFAP1Q8N556 730 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 FANCBQ8NB91 859 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PLIN2Q99541 437 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PHF2O75151 1096 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ITIH2P19823 946 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 HIF1AQ16665 826 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 PARP10Q53GL7 1025 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 LVRNQ6Q4G3 990 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 SCUBE1Q8IWY4 988 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ARHGEF10LQ9HCE6 1279 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 TAF4O00268 1085 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 ABCB1P08183 1280 aaPredicted RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 TNFRSF8P28908 595 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 TXKP42681 527 aa9.28□□□□□ -0.92
TTC28-208ENST00000612946 RBM20Q5T481 1227 aaKnown RBP9.28□□□□□ -0.92
TTC28-208ENST00000612946 CHST3Q7LGC8 479 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms