RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CHMP4AQ9BY43 222 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 ARHGAP39Q9C0H5 1083 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 EPHX3Q9H6B9 360 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF652Q9Y2D9 606 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 HS3ST3A1Q9Y663 406 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 BDP1A6H8Y1 2624 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF646O15015 1829 aaPredicted RBP5.8□□□□□ -1.48
LINC00540-201ENST00000611481 RIC1Q4ADV7 1423 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 CACNA1BQ00975 2339 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 PATE3B3GLJ2 98 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 FYB1O15117 783 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 MUSKO15146 869 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 MYO1BO43795 1136 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 NF2P35240 595 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 IL6STP40189 918 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 TNNT2P45379 298 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 GTF2A2P52657 109 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 MLLT6P55198 1093 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 PAK2Q13177 524 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 CRY2Q49AN0 593 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 GTF2IRD2BQ6EKJ0 949 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 DPP8Q6V1X1 898 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ARMC9Q7Z3E5 817 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 GTF2IRD2Q86UP8 949 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF654Q8IZM8 581 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 KLHL36Q8N4N3 616 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 NPLOC4Q8TAT6 608 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 FRS2Q8WU20 508 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ZSWIM3Q96MP5 696 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ASB2Q96Q27 587 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 TMEM209Q96SK2 561 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 RTFDC1Q9BY42 306 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 FTSJ1Q9UET6 329 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 NIP7Q9Y221 180 aaKnown RBP eCLIP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 COA3Q9Y2R0 106 aaPredicted RBP5.79□□□□□ -1.48
LINC00540-201ENST00000611481 TESMINQ9Y4I5 508 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ABCC12Q96J65 1359 aa5.79□□□□□ -1.48
LINC00540-201ENST00000611481 ZDBF2Q9HCK1 2354 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 HGSO14964 777 aaPredicted RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 B4GALT4O60513 344 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF623O75123 536 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 SGPL1O95470 568 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 TFRCP02786 760 aaKnown RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 RPS12P25398 132 aaKnown RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 BCL6P41182 706 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF143P52747 638 aaPredicted RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 CASP7P55210 303 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 AMOTQ4VCS5 1084 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 E4F1Q66K89 784 aaPredicted RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 TRIM59Q8IWR1 403 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 ATXN2LQ8WWM7 1075 aaKnown RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 TMEM169Q96HH4 297 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 RBM17Q96I25 401 aaKnown RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 PAWRQ96IZ0 340 aaKnown RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 WNK4Q96J92 1243 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 WWC2-AS2Q96NR7 200 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 NKX2-4Q9H2Z4 354 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 DBNDD1Q9H9R9 158 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 SLC52A2Q9HAB3 445 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 BARX1Q9HBU1 254 aaPredicted RBP5.78□□□□□ -1.48
LINC00540-201ENST00000611481 DTLQ9NZJ0 730 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 CROTQ9UKG9 612 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 ATP6V0A2Q9Y487 856 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 ZSWIM8A7E2V4 1837 aa5.78□□□□□ -1.48
LINC00540-201ENST00000611481 KIF7Q2M1P5 1343 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 BAHCC1Q9P281 2608 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 A1BGP04217 495 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 ZBTB48P10074 688 aaPredicted RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 TCF3P15923 654 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 ZNF16P17020 682 aaPredicted RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 UBXN2AP68543 259 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 KIF22Q14807 665 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 SPDYAQ5MJ70 313 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 TEPPQ6URK8 271 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 CLEC4GQ6UXB4 293 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 RAET1EQ8TD07 263 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 DIS3LQ8TF46 1054 aaKnown RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 PPM1EQ8WY54 764 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 ZCCHC14Q8WYQ9 949 aaKnown RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 DIO2Q92813 273 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 CRAMP1Q96RY5 1269 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 PTPN18Q99952 460 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 TTYH1Q9H313 450 aaPredicted RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 FZD1Q9UP38 647 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 PCDHB4Q9Y5E5 795 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 CDH23Q9H251 3354 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 TAF1P21675 1872 aa5.77□□□□□ -1.49
LINC00540-201ENST00000611481 COL2A1P02458 1487 aaPredicted RBP5.77□□□□□ -1.49
LINC00540-201ENST00000611481 KRT37O76014 449 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 PIP4K2AP48426 406 aaPredicted RBP5.76□□□□□ -1.49
LINC00540-201ENST00000611481 PRMT2P55345 433 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 MRPS5P82675 430 aaKnown RBP5.76□□□□□ -1.49
LINC00540-201ENST00000611481 LACTBP83111 547 aaPredicted RBP5.76□□□□□ -1.49
LINC00540-201ENST00000611481 NHLH1Q02575 133 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 KRTAP1-1Q07627 177 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 NFATC3Q12968 1075 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 KLF10Q13118 480 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 KCNAB2Q13303 367 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 STEAP3Q658P3 488 aa5.76□□□□□ -1.49
LINC00540-201ENST00000611481 TRMT10BQ6PF06 316 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms