RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ERLIN2O94905 339 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 EPCAMP16422 314 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 TXKP42681 527 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 AFF1P51825 1210 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 CALCRLQ16602 461 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 AGMOQ6ZNB7 445 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 DDX53Q86TM3 631 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 FERMT3Q86UX7 667 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 SUGP1Q8IWZ8 645 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 CPB2Q96IY4 423 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 EIF2AK1Q9BQI3 630 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 TRAIPQ9BWF2 469 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 ZBP1Q9H171 429 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 RSAD1Q9HA92 442 aa19.61■□□□□ 0.73
SHKBP1-223ENST00000600552 TRIOO75962 3097 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 BTBD18B2RXH4 712 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 INO80B-WBP1J3KQ70 363 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 B4GALT3O60512 393 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 JAK2O60674 1132 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 ZNF623O75123 536 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 DDHD2O94830 711 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 NEK4P51957 841 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 TRIM29Q14134 588 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 ADAM7Q9H2U9 754 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 POMKQ9H5K3 350 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 PCDHA12Q9UN75 941 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 FAN1Q9Y2M0 1017 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 PRG3Q9Y2Y8 225 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 NR2E1Q9Y466 385 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 MYO10Q9HD67 2058 aa19.6■□□□□ 0.73
SHKBP1-223ENST00000600552 C2CD2LO14523 706 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 ASAP2O43150 1006 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 SLITRK3O94933 977 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 ALDH2P05091 517 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 CTSAP10619 480 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 ITGA4P13612 1032 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 ANAPC15P60006 121 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 GUCY1B3Q02153 619 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 NHLH1Q02575 133 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 PTPN21Q16825 1174 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 UBXN11Q5T124 520 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 IER5LQ5T953 404 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 MAEAQ7L5Y9 396 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 GTF3C6Q969F1 213 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 PPP4R2Q9NY27 417 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 PPME1Q9Y570 386 aa19.59■□□□□ 0.73
SHKBP1-223ENST00000600552 C2CD4DB7Z1M9 353 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 MYBP10242 640 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 KLRC2P26717 231 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 HOXA11P31270 313 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 ITIH3Q06033 890 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 SPIRE1Q08AE8 756 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 SIGLEC14Q08ET2 396 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 NCBP1Q09161 790 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 TMC5Q6UXY8 1006 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 MRPL10Q7Z7H8 261 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 CABP7Q86V35 215 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 DIS3L2Q8IYB7 885 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 ASAP3Q8TDY4 903 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 PIGOQ8TEQ8 1089 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 RIPOR3Q96MK2 946 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 VN1R3Q9BXE9 311 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 EIF2AQ9BY44 585 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 TTC12Q9H892 705 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 DBR1Q9UK59 544 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 HES2Q9Y543 173 aa19.58■□□□□ 0.72
SHKBP1-223ENST00000600552 WNT7AO00755 349 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 MTHFRP42898 656 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 OR1G1P47890 313 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 MRE11P49959 708 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 TFDP1Q14186 410 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 ATAT1Q5SQI0 421 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 CDR2LQ86X02 465 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 FBXL6Q8N531 539 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 KREMEN2Q8NCW0 462 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 SMG8Q8ND04 991 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 NSUN7Q8NE18 718 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 FEZF2Q8TBJ5 459 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 TNFRSF25Q93038 417 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 NECTIN4Q96NY8 510 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 GAD1Q99259 594 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 RNF39Q9H2S5 420 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 XPNPEP1Q9NQW7 623 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 DZANK1Q9NVP4 752 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 KANSL3Q9P2N6 904 aa19.57■□□□□ 0.72
SHKBP1-223ENST00000600552 ZNF318Q5VUA4 2279 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 ARID2Q68CP9 1835 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 NRP1O14786 923 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 GAS2O43903 313 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 NEMFO60524 1076 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 TSPAN1O60635 241 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 GIT2Q14161 759 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 MXD4Q14582 209 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 PTPN14Q15678 1187 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 BMP8AQ7Z5Y6 402 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 SLC22A17Q8WUG5 538 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 RSPH1Q8WYR4 309 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 EMILIN2Q9BXX0 1053 aa19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 TRIM6Q9C030 488 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-223ENST00000600552 IPPQ9Y573 584 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms