RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ASIC1P78348 528 aa21.31■■□□□ 1
UPF1-209ENST00000600310 NCBP1Q09161 790 aaKnown RBP21.31■■□□□ 1
UPF1-209ENST00000600310 SLC24A5Q71RS6 500 aa21.31■■□□□ 1
UPF1-209ENST00000600310 SFR1Q86XK3 245 aa21.31■■□□□ 1
UPF1-209ENST00000600310 FAM178BQ8IXR5 827 aa21.31■■□□□ 1
UPF1-209ENST00000600310 GRAMD1CQ8IYS0 662 aa21.31■■□□□ 1
UPF1-209ENST00000600310 TRAIPQ9BWF2 469 aa21.31■■□□□ 1
UPF1-209ENST00000600310 BLZF1Q9H2G9 400 aa21.31■■□□□ 1
UPF1-209ENST00000600310 DACT1Q9NYF0 836 aa21.31■■□□□ 1
UPF1-209ENST00000600310 C9IYK1 514 aa21.3■■□□□ 1
UPF1-209ENST00000600310 ATP2A2P16615 1042 aaKnown RBP21.3■■□□□ 1
UPF1-209ENST00000600310 ARF4P18085 180 aaPredicted RBP21.3■■□□□ 1
UPF1-209ENST00000600310 LIG1P18858 919 aa21.3■■□□□ 1
UPF1-209ENST00000600310 FAM189BP81408 668 aa21.3■■□□□ 1
UPF1-209ENST00000600310 CUL4BQ13620 913 aa21.3■■□□□ 1
UPF1-209ENST00000600310 KANK3Q6NY19 840 aa21.3■■□□□ 1
UPF1-209ENST00000600310 TAS1R3Q7RTX0 852 aa21.3■■□□□ 1
UPF1-209ENST00000600310 HAUS6Q7Z4H7 955 aa21.3■■□□□ 1
UPF1-209ENST00000600310 MYOCDQ8IZQ8 938 aa21.3■■□□□ 1
UPF1-209ENST00000600310 SLC17A8Q8NDX2 589 aa21.3■■□□□ 1
UPF1-209ENST00000600310 CCDC34Q96HJ3 373 aa21.3■■□□□ 1
UPF1-209ENST00000600310 CNTNAP2Q9UHC6 1331 aa21.29■■□□□ 1
UPF1-209ENST00000600310 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.29■■□□□ 1
UPF1-209ENST00000600310 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.29■■□□□ 1
UPF1-209ENST00000600310 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.29■■□□□ 1
UPF1-209ENST00000600310 PVALEFA0A1B0GWK0 134 aa21.29■■□□□ 1
UPF1-209ENST00000600310 B4GALT5O43286 388 aa21.29■■□□□ 1
UPF1-209ENST00000600310 GTPBP6O43824 516 aaPredicted RBP21.29■■□□□ 1
UPF1-209ENST00000600310 CASP1P29466 404 aa21.29■■□□□ 1
UPF1-209ENST00000600310 SARSP49591 514 aaKnown RBP21.29■■□□□ 1
UPF1-209ENST00000600310 PRPF4BQ13523 1007 aaKnown RBP21.29■■□□□ 1
UPF1-209ENST00000600310 LRIT3Q3SXY7 679 aa21.29■■□□□ 1
UPF1-209ENST00000600310 HERC4Q5GLZ8 1057 aaPredicted RBP21.29■■□□□ 1
UPF1-209ENST00000600310 TWF2Q6IBS0 349 aaKnown RBP21.29■■□□□ 1
UPF1-209ENST00000600310 NOTUMQ6P988 496 aa21.29■■□□□ 1
UPF1-209ENST00000600310 UNC13DQ70J99 1090 aa21.29■■□□□ 1
UPF1-209ENST00000600310 TOP1MTQ969P6 601 aa21.29■■□□□ 1
UPF1-209ENST00000600310 CCDC51Q96ER9 411 aa21.29■■□□□ 1
UPF1-209ENST00000600310 TIGD1Q96MW7 591 aa21.29■■□□□ 1
UPF1-209ENST00000600310 ST6GALNAC4Q9H4F1 302 aa21.29■■□□□ 1
UPF1-209ENST00000600310 OLFML3Q9NRN5 406 aa21.29■■□□□ 1
UPF1-209ENST00000600310 A0A0U1RQF3 1178 aa21.28■■□□□ 1
UPF1-209ENST00000600310 A0A1B0GUA9 196 aa21.28■■□□□ 1
UPF1-209ENST00000600310 K7ENM7 598 aa21.28■■□□□ 1
UPF1-209ENST00000600310 NR1I2O75469 434 aa21.28■■□□□ 1
UPF1-209ENST00000600310 EDN1P05305 212 aa21.28■■□□□ 1
UPF1-209ENST00000600310 ABCD1P33897 745 aa21.28■■□□□ 1
UPF1-209ENST00000600310 COASYQ13057 564 aa21.28■■□□□ 1
UPF1-209ENST00000600310 ZNF720Q7Z2F6 126 aa21.28■■□□□ 1
UPF1-209ENST00000600310 HERC6Q8IVU3 1022 aa21.28■■□□□ 1
UPF1-209ENST00000600310 CRIPAKQ8N1N5 446 aa21.28■■□□□ 1
UPF1-209ENST00000600310 CPB2Q96IY4 423 aa21.28■■□□□ 1
UPF1-209ENST00000600310 TTLL13PA6NNM8 815 aa21.27■■□□□ 1
UPF1-209ENST00000600310 NMT1P30419 496 aaKnown RBP21.27■■□□□ 1
UPF1-209ENST00000600310 GTF2BQ00403 316 aa21.27■■□□□ 1
UPF1-209ENST00000600310 STRN3Q13033 797 aa21.27■■□□□ 1
UPF1-209ENST00000600310 UBXN11Q5T124 520 aa21.27■■□□□ 1
UPF1-209ENST00000600310 NT5DC1Q5TFE4 455 aa21.27■■□□□ 1
UPF1-209ENST00000600310 FAM109BQ6ICB4 259 aaPredicted RBP21.27■■□□□ 1
UPF1-209ENST00000600310 ECHDC2Q86YB7 292 aa21.27■■□□□ 1
UPF1-209ENST00000600310 NPAS4Q8IUM7 802 aa21.27■■□□□ 1
UPF1-209ENST00000600310 MRPL4Q9BYD3 311 aaKnown RBP21.27■■□□□ 1
UPF1-209ENST00000600310 ELAC1Q9H777 363 aaKnown RBP21.27■■□□□ 1
UPF1-209ENST00000600310 MRPL44Q9H9J2 332 aaKnown RBP21.27■■□□□ 1
UPF1-209ENST00000600310 FAM105AQ9NUU6 356 aa21.27■■□□□ 1
UPF1-209ENST00000600310 RNF216Q9NWF9 866 aaPredicted RBP21.27■■□□□ 1
UPF1-209ENST00000600310 MICAL3Q7RTP6 2002 aa21.27■■□□□ 1
UPF1-209ENST00000600310 GRXCR1A8MXD5 290 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 KLRC4O43908 158 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 ZNF623O75123 536 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 PPP1R37O75864 691 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 GJB5O95377 273 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 PRR29P0C7W0 189 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 STAG3L1P0CL83 205 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 SKIP12755 728 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 RAB27AP51159 221 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 EHHADHQ08426 723 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 TMCO2Q7Z6W1 182 aaPredicted RBP21.26■□□□□ 0.99
UPF1-209ENST00000600310 ELOA2Q8IYF1 753 aaPredicted RBP21.26■□□□□ 0.99
UPF1-209ENST00000600310 STRA6Q9BX79 667 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 LMBRD1Q9NUN5 540 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 TMEM161AQ9NX61 479 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 TBC1D7Q9P0N9 293 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 TBX20Q9UMR3 447 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 USP20Q9Y2K6 914 aa21.26■□□□□ 0.99
UPF1-209ENST00000600310 GOLGA6L22H0YM25 854 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 N4BP3O15049 544 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 KINO60870 393 aaKnown RBP21.25■□□□□ 0.99
UPF1-209ENST00000600310 SMAD3P84022 425 aaKnown RBP21.25■□□□□ 0.99
UPF1-209ENST00000600310 DPYDQ12882 1025 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 POSTNQ15063 836 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 ATF7IP2Q5U623 682 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 ZNF598Q86UK7 904 aaKnown RBP21.25■□□□□ 0.99
UPF1-209ENST00000600310 HVCN1Q96D96 273 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 ACO2Q99798 780 aaKnown RBP21.25■□□□□ 0.99
UPF1-209ENST00000600310 TARS2Q9BW92 718 aaKnown RBP21.25■□□□□ 0.99
UPF1-209ENST00000600310 PDZD7Q9H5P4 517 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 TNFSF13BQ9Y275 285 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 PCDHB7Q9Y5E2 793 aa21.25■□□□□ 0.99
UPF1-209ENST00000600310 PCDHB2Q9Y5E7 798 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms