RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SRGAP1Q7Z6B7 1085 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 C12orf56Q8IXR9 622 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 ZC3H3Q8IXZ2 948 aaKnown RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 CNOT6LQ96LI5 555 aaKnown RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 MRPL4Q9BYD3 311 aaKnown RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 GCOM2Q9BZD3 368 aaPredicted RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 TRIM5Q9C035 493 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 INO80BQ9C086 356 aaPredicted RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 HSD3B7Q9H2F3 369 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 PRMT7Q9NVM4 692 aaPredicted RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 NOD1Q9Y239 953 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 A0A087WZ62 844 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 SLC16A3O15427 465 aaKnown RBP16.92■□□□□ 0.3
UPF1-206ENST00000598471 PIGRP01833 764 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 EPB41P11171 864 aaKnown RBP16.92■□□□□ 0.3
UPF1-206ENST00000598471 ZNF200P98182 395 aaPredicted RBP16.92■□□□□ 0.3
UPF1-206ENST00000598471 FANCCQ00597 558 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 HIC1Q14526 733 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 PTGISQ16647 500 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 CCDC40Q4G0X9 1142 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 FILIP1LQ4L180 1135 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 TCP11X2Q5H9J9 407 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 LRRC55Q6ZSA7 311 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 TAS1R3Q7RTX0 852 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 FILIP1Q7Z7B0 1213 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 CREBRFQ8IUR6 639 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 SLC9A9Q8IVB4 645 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 DNAJB3Q8WWF6 145 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 FDXACB1Q9BRP7 624 aaPredicted RBP16.92■□□□□ 0.3
UPF1-206ENST00000598471 CCDC113Q9H0I3 377 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 FRMD4BQ9Y2L6 1034 aa16.92■□□□□ 0.3
UPF1-206ENST00000598471 KIAA0391O15091 583 aaKnown RBP16.91■□□□□ 0.3
UPF1-206ENST00000598471 CLIC2O15247 247 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 TFRCP02786 760 aaKnown RBP16.91■□□□□ 0.3
UPF1-206ENST00000598471 ATP1A3P13637 1013 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 CAPN2P17655 700 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 GARTP22102 1010 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 MTIF2P46199 727 aaKnown RBP16.91■□□□□ 0.3
UPF1-206ENST00000598471 PCBP1Q15365 356 aaKnown RBP eCLIP16.91■□□□□ 0.3
UPF1-206ENST00000598471 TMEM132AQ24JP5 1023 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 SLFN12LQ6IEE8 588 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 ZPBP2Q6X784 338 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 SERINC5Q86VE9 423 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 TMEM174Q8WUU8 243 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 ZNF668Q96K58 619 aaPredicted RBP16.91■□□□□ 0.3
UPF1-206ENST00000598471 PRIMPOLQ96LW4 560 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 MKNK1Q9BUB5 465 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 LIMA1Q9UHB6 759 aaKnown RBP16.91■□□□□ 0.3
UPF1-206ENST00000598471 GRIN2DO15399 1336 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 SIP14410 1827 aa16.91■□□□□ 0.3
UPF1-206ENST00000598471 ARVCFO00192 962 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 ACKR2O00590 384 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 EXOC3O60645 756 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 SGPL1O95470 568 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 PSMC2P35998 433 aaKnown RBP16.9■□□□□ 0.3
UPF1-206ENST00000598471 CYP2J2P51589 502 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 UBASH3AP57075 661 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 MBTD1Q05BQ5 628 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 NCBP1Q09161 790 aaKnown RBP16.9■□□□□ 0.3
UPF1-206ENST00000598471 PTK7Q13308 1070 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 PRPF4BQ13523 1007 aaKnown RBP16.9■□□□□ 0.3
UPF1-206ENST00000598471 FAM187BQ17R55 369 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 KIZQ2M2Z5 673 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 CEP135Q66GS9 1140 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 SLC43A3Q8NBI5 491 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 U2AF1L4Q8WU68 220 aaKnown RBP16.9■□□□□ 0.3
UPF1-206ENST00000598471 POMGNT1Q8WZA1 660 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 PPP1R16BQ96T49 567 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 CRISPLD2Q9H0B8 497 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 FZD8Q9H461 694 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 IFT122Q9HBG6 1241 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 METTL14Q9HCE5 456 aaKnown RBP16.9■□□□□ 0.3
UPF1-206ENST00000598471 GINS2Q9Y248 185 aa16.9■□□□□ 0.3
UPF1-206ENST00000598471 EVPLQ92817 2033 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 ANKRD63C9JTQ0 380 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 GPR32O75388 356 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 ERLIN2O94905 339 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 ADCY5O95622 1261 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 MATR3P43243 847 aaKnown RBP eCLIP16.89■□□□□ 0.29
UPF1-206ENST00000598471 GJA8P48165 433 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 CRYBB1P53674 252 aaPredicted RBP16.89■□□□□ 0.29
UPF1-206ENST00000598471 MRPS6P82932 125 aaKnown RBP16.89■□□□□ 0.29
UPF1-206ENST00000598471 TMEM62Q0P6H9 643 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 KRT31Q15323 416 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 RPAINQ86UA6 219 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 IRF2BP1Q8IU81 584 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 XXYLT1Q8NBI6 393 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 EEF2KMTQ96G04 330 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 TARS2Q9BW92 718 aaKnown RBP16.89■□□□□ 0.29
UPF1-206ENST00000598471 IKZF4Q9H2S9 585 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 ADAMTS10Q9H324 1103 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 DMAC2Q9NW81 257 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 HSPBP1Q9NZL4 362 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 IFNKQ9P0W0 207 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 TRPV2Q9Y5S1 764 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 CENPFP49454 3210 aa16.89■□□□□ 0.29
UPF1-206ENST00000598471 CAND2O75155 1236 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 TOM1L1O75674 476 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 SFPQP23246 707 aaKnown RBP eCLIP16.88■□□□□ 0.29
UPF1-206ENST00000598471 ZNF75DP51815 510 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms