RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 LINC00301Q8NCQ3 95 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 SMG8Q8ND04 991 aaKnown RBP17.84■□□□□ 0.45
TRIM28-213ENST00000598355 KCNN1Q92952 543 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 DRC1Q96MC2 740 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 MRPL9Q9BYD2 267 aaKnown RBP17.84■□□□□ 0.45
TRIM28-213ENST00000598355 CSRNP2Q9H175 543 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 TYW1Q9NV66 732 aaKnown RBP17.84■□□□□ 0.45
TRIM28-213ENST00000598355 ARHGAP28Q9P2N2 729 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 PLAGL2Q9UPG8 496 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 CITO14578 2027 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 PHLPP2Q6ZVD8 1323 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 GRM6O15303 877 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 ITGB1P05556 798 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PLA2G4BP0C869 781 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 LAG3P18627 525 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PLCG1P19174 1290 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 IBSPP21815 317 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 MARCKSP29966 332 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 COL19A1Q14993 1142 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 KARSQ15046 597 aaKnown RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PTPROQ16827 1216 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 TIGD5Q53EQ6 642 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 USP49Q70CQ1 688 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 ABI1Q8IZP0 508 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 COLGALT1Q8NBJ5 622 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 CNNM3Q8NE01 707 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 HELQQ8TDG4 1101 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 LPPQ93052 612 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PGBD4Q96DM1 585 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 CALML4Q96GE6 196 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 CPB2Q96IY4 423 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 CDK5RAP3Q96JB5 506 aa17.83■□□□□ 0.44
TRIM28-213ENST00000598355 EIF2AQ9BY44 585 aaKnown RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 DAXXQ9UER7 740 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 PDCD11Q14690 1871 aaKnown RBP17.83■□□□□ 0.44
TRIM28-213ENST00000598355 TTLL13PA6NNM8 815 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 OFD1O75665 1012 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 YEATS4O95619 227 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 NPTX2P47972 431 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 EFNA5P52803 228 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 MAPK6Q16659 721 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 CSPP1Q1MSJ5 1256 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 ARSHQ5FYA8 562 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 KLHL23Q8NBE8 558 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 RNF169Q8NCN4 708 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 DEPTORQ8TB45 409 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 SPPL3Q8TCT6 385 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 EPSTI1Q96J88 318 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 IFT74Q96LB3 600 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 PLIN2Q99541 437 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 NTPCRQ9BSD7 190 aaKnown RBP17.82■□□□□ 0.44
TRIM28-213ENST00000598355 KIFC3Q9BVG8 833 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 IPPQ9Y573 584 aa17.82■□□□□ 0.44
TRIM28-213ENST00000598355 ACKR2O00590 384 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 PPP6R2O75170 966 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 PRKCBP05771 671 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 DNAJB1P25685 340 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 UBE3AQ05086 875 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 ZRSR1Q15695 479 aaKnown RBP17.81■□□□□ 0.44
TRIM28-213ENST00000598355 CCDC85BQ15834 202 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-213ENST00000598355 SLC27A1Q6PCB7 646 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 GLB1LQ6UWU2 654 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 TAS1R3Q7RTX0 852 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 KRI1Q8N9T8 703 aaKnown RBP17.81■□□□□ 0.44
TRIM28-213ENST00000598355 SPIRE2Q8WWL2 714 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 RAD54LQ92698 747 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 SYMPKQ92797 1274 aaKnown RBP17.81■□□□□ 0.44
TRIM28-213ENST00000598355 CLIC6Q96NY7 704 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 PDZD7Q9H5P4 517 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 RSAD1Q9HA92 442 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 POLD4Q9HCU8 107 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 PRDM6Q9NQX0 595 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 AAASQ9NRG9 546 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 TBC1D13Q9NVG8 400 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 STK17AQ9UEE5 414 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 ODF2LQ9ULJ1 636 aa17.81■□□□□ 0.44
TRIM28-213ENST00000598355 ZNF131P52739 623 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 PLCB3Q01970 1234 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 CEBPZQ03701 1054 aaKnown RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 NCBP1Q09161 790 aaKnown RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 DMP1Q13316 513 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 NOMO2Q5JPE7 1267 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 ATL3Q6DD88 541 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 KCNT2Q6UVM3 1135 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 MICALL1Q8N3F8 863 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 LARP4BQ92615 738 aaKnown RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 ZNF396Q96N95 335 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 NXF3Q9H4D5 531 aaKnown RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 TMEM134Q9H6X4 195 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 ALG13Q9NP73 1137 aaKnown RBP17.8■□□□□ 0.44
TRIM28-213ENST00000598355 THEGQ9P2T0 379 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 LZTS1Q9Y250 596 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 PCDHB12Q9Y5F1 795 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 NCOR1O75376 2440 aa17.8■□□□□ 0.44
TRIM28-213ENST00000598355 CARNS1A5YM72 827 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 N4BP3O15049 544 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 B4GALT3O60512 393 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 FGF18O76093 207 aa17.79■□□□□ 0.44
TRIM28-213ENST00000598355 BRD1O95696 1058 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms