RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SFNP31947 248 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 JAK3P52333 1124 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 DRP2Q13474 957 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 HTR4Q13639 388 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 COL9A3Q14050 684 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 TARBP2Q15633 366 aaKnown RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 UGCGQ16739 394 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 CATSPER4Q7RTX7 472 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 CCDC12Q8WUD4 166 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 HDAC7Q8WUI4 952 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 SECISBP2LQ93073 1101 aaKnown RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 FDXACB1Q9BRP7 624 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 RSAD1Q9HA92 442 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 SEPT9Q9UHD8 586 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 PCDHB2Q9Y5E7 798 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 CACNA1GO43497 2377 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 IGKV6-21A0A0C4DH24 114 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 POTEMA6NI47 508 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 NRP1O14786 923 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 CHMP2AO43633 222 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 GAS7O60861 476 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 RFPL2O75678 378 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 DDHD2O94830 711 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 C1RP00736 705 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 LAMP2P13473 410 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 CIITAP33076 1130 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 GLUD2P49448 558 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 LMNB2Q03252 620 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 PFKFB3Q16875 520 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 MTERF2Q49AM1 385 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 XKR3Q5GH77 459 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 VARS2Q5ST30 1063 aaKnown RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 KIAA0319Q5VV43 1072 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 POTEGQ6S5H5 508 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 AGMOQ6ZNB7 445 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 GET4Q7L5D6 327 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 RHPN2Q8IUC4 686 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 EXOC6Q8TAG9 804 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 PHKBQ93100 1093 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 LENG9Q96B70 501 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 ZNF707Q96C28 371 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 RIT2Q99578 217 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 NIFKQ9BYG3 293 aaKnown RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 BCO2Q9BYV7 579 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 FOXQ1Q9C009 403 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 PLEKHA4Q9H4M7 779 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 PIDD1Q9HB75 910 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 RXFP1Q9HBX9 757 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 C6orf50Q9HD87 102 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 AGPAT5Q9NUQ2 364 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 ZDHHC7Q9NXF8 308 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 SUCLA2Q9P2R7 463 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 FBXO4Q9UKT5 387 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 PCDHGA2Q9Y5H1 932 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 ZFP37Q9Y6Q3 630 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-210ENST00000597618 NUMBLQ9Y6R0 609 aa11.39□□□□□ -0.59
TRIM28-210ENST00000597618 MAP1BP46821 2468 aaKnown RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 FANCMQ8IYD8 2048 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 GOLGA8AA7E2F4 631 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 GOLGA8BA8MQT2 603 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 PRR5-ARHGAP8B1AHC4 643 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 LAMTOR5O43504 91 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 GLULP15104 373 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 STARD6P59095 220 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 ARHGAP8P85298 464 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 CREB3L3Q68CJ9 461 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 MAML2Q8IZL2 1156 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 RDM1Q8NG50 284 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 ATRIPQ8WXE1 791 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 NLRP4Q96MN2 994 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 TEKT3Q9BXF9 490 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 LSG1Q9H089 658 aaKnown RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 ZMYND12Q9H0C1 365 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 SPATA6Q9NWH7 488 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 MARCH5Q9NX47 278 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 CDV3Q9UKY7 258 aaKnown RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 PRG3Q9Y2Y8 225 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-210ENST00000597618 USP24Q9UPU5 2620 aa11.38□□□□□ -0.59
TRIM28-210ENST00000597618 CACNA1IQ9P0X4 2223 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 KANSL1LA0AUZ9 987 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 MSH4O15457 936 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 POMCP01189 267 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 GNA11P29992 359 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 MAGEA9P43362 315 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 AFF1P51825 1210 aaKnown RBP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 RCAN1P53805 252 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 ATXN1P54253 815 aaKnown RBP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 DSG1Q02413 1049 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 LRCH2Q5VUJ6 765 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 MRPL10Q7Z7H8 261 aaKnown RBP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 RNF168Q8IYW5 571 aaPredicted RBP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 SLC5A5Q92911 643 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 CEP89Q96ST8 783 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 JPH2Q9BR39 696 aaPredicted RBP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 PRKD2Q9BZL6 878 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 NT5C3AQ9H0P0 336 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 UNC45AQ9H3U1 944 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 UBN1Q9NPG3 1134 aa11.37□□□□□ -0.59
TRIM28-210ENST00000597618 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.37□□□□□ -0.59
TRIM28-210ENST00000597618 DOCK8Q8NF50 2099 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms