RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PIGRP01833 764 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 VTNP04004 478 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 GARTP22102 1010 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 PSMC2P35998 433 aaKnown RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 GPC3P51654 580 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 TMEM132AQ24JP5 1023 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 ARMCX5Q6P1M9 558 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 APBB1IPQ7Z5R6 666 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 FRMD5Q7Z6J6 570 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 ZC3H3Q8IXZ2 948 aaKnown RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 DNAJB3Q8WWF6 145 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 ARMC5Q96C12 935 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 ZBTB10Q96DT7 871 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 PRIMPOLQ96LW4 560 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 MKNK1Q9BUB5 465 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 HSD3B7Q9H2F3 369 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 DMAC2Q9NW81 257 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 A0A087WZ62 844 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 A0A1W2PQ45 241 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 A0A1W2PQY0 241 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 CLIC2O15247 247 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 ADCY5O95622 1261 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 MYCP01106 439 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 PRKCBP05771 671 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 GJB1P08034 283 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 ATP1A3P13637 1013 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 PPP2R3AQ06190 1150 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 PRPF4BQ13523 1007 aaKnown RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 MTFR1Q15390 333 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 PTGISQ16647 500 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 FAM187BQ17R55 369 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 HSP90AA4PQ58FG1 418 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 CEP135Q66GS9 1140 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 GDF6Q6KF10 455 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 LRRC55Q6ZSA7 311 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 RPAINQ86UA6 219 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 XXYLT1Q8NBI6 393 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 POMGNT1Q8WZA1 660 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 ZNF333Q96JL9 665 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 CNOT6LQ96LI5 555 aaKnown RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 FDXACB1Q9BRP7 624 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 FZD8Q9H461 694 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 IFNKQ9P0W0 207 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 ARMCX3Q9UH62 379 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-209ENST00000597423 ADGRA3Q8IWK6 1321 aa16.68■□□□□ 0.26
TRIM28-209ENST00000597423 N4BP3O15049 544 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 SGPL1O95470 568 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 LDHAP00338 332 aaKnown RBP16.67■□□□□ 0.26
TRIM28-209ENST00000597423 MATR3P43243 847 aaKnown RBP eCLIP16.67■□□□□ 0.26
TRIM28-209ENST00000597423 CYP2J2P51589 502 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 ZNF75DP51815 510 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 CRYBB1P53674 252 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-209ENST00000597423 ZNF200P98182 395 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-209ENST00000597423 PTK7Q13308 1070 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 RUFY4Q6ZNE9 571 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 USP37Q86T82 979 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 SERINC5Q86VE9 423 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 IRF2BP1Q8IU81 584 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 MRFAP1L1Q96HT8 127 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 TUBGCP2Q9BSJ2 902 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 TCHPQ9BT92 498 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 CCDC113Q9H0I3 377 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 ADAMTS10Q9H324 1103 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 IFT122Q9HBG6 1241 aa16.67■□□□□ 0.26
TRIM28-209ENST00000597423 ZMYM2Q9UBW7 1377 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 ARID2Q68CP9 1835 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 GOLGA6L6A8MZA4 724 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 ARVCFO00192 962 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 MAPK13O15264 365 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 CLDN3O15551 220 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 CAND2O75155 1236 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 GPR32O75388 356 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 TOM1L1O75674 476 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 ERLIN2O94905 339 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 KRT13P13646 458 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 MARSP56192 900 aaKnown RBP16.66■□□□□ 0.26
TRIM28-209ENST00000597423 MBTD1Q05BQ5 628 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 CCDC173Q0VFZ6 552 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 KRT31Q15323 416 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 KIZQ2M2Z5 673 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 FKBP15Q5T1M5 1219 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 TSHZ1Q6ZSZ6 1077 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 TAS1R3Q7RTX0 852 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-209ENST00000597423 DRC7Q8IY82 874 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 FAM186BQ8IYM0 893 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 SLC43A3Q8NBI5 491 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 NOC4LQ9BVI4 516 aaKnown RBP16.66■□□□□ 0.26
TRIM28-209ENST00000597423 TMEM106CQ9BVX2 250 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 TARS2Q9BW92 718 aaKnown RBP16.66■□□□□ 0.26
TRIM28-209ENST00000597423 CELF4Q9BZC1 486 aaKnown RBP16.66■□□□□ 0.26
TRIM28-209ENST00000597423 CRISPLD2Q9H0B8 497 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 PRDM10Q9NQV6 1147 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 HSPBP1Q9NZL4 362 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 STYXL1Q9Y6J8 313 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 GRIN2DO15399 1336 aa16.66■□□□□ 0.26
TRIM28-209ENST00000597423 ANKRD63C9JTQ0 380 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 SFPQP23246 707 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 EIF4BP23588 611 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 COPB1P53618 953 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms