RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 A0A087X0B3 334 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 K7ERI5 159 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 SLC16A4O15374 487 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 FAM13AO94988 1023 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 PRKCBP05771 671 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 IGFBP4P22692 258 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 GUCY2CP25092 1073 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 AXLP30530 894 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 NPTX2P47972 431 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 FAM189BP81408 668 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 MAPK7Q13164 816 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 DMP1Q13316 513 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 AXDND1Q5T1B0 1012 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 NOTUMQ6P988 496 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 SHC4Q6S5L8 630 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 FAM43BQ6ZT52 329 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 IFNLR1Q8IU57 520 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 DAW1Q8N136 415 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 MYCT1Q8N699 235 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 HELQQ8TDG4 1101 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 LEO1Q8WVC0 666 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 DHX58Q96C10 678 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 TGS1Q96RS0 853 aaKnown RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 REEP2Q9BRK0 252 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 C17orf80Q9BSJ5 609 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 TIPINQ9BVW5 301 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 APOL6Q9BWW8 343 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 FAM105AQ9NUU6 356 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 PRMT7Q9NVM4 692 aaPredicted RBP12.23□□□□□ -0.45
LIG1-211ENST00000596457 TMEM161AQ9NX61 479 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 FAM13BQ9NYF5 915 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 STK17AQ9UEE5 414 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 PIEZO1Q92508 2521 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 A0A0U1RQF3 1178 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 TBCAO75347 108 aaKnown RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 NPTXRO95502 500 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 SKIP12755 728 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 PLS3P13797 630 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 ARF4P18085 180 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 POU3F3P20264 500 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 HOXA11P31270 313 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 SMTNP53814 917 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 PRPF4BQ13523 1007 aaKnown RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 GIT2Q14161 759 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 MAPK6Q16659 721 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 CDCA2Q69YH5 1023 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 ABI1Q8IZP0 508 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 ZNF689Q96CS4 500 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 EIF2AQ9BY44 585 aaKnown RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 NFKBIZQ9BYH8 718 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 TRIM6Q9C030 488 aaPredicted RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 ELAC1Q9H777 363 aaKnown RBP12.22□□□□□ -0.45
LIG1-211ENST00000596457 KCND2Q9NZV8 630 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 INPP5FQ9Y2H2 1132 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 PCDHB2Q9Y5E7 798 aa12.22□□□□□ -0.45
LIG1-211ENST00000596457 RALGAPA2Q2PPJ7 1873 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 EPOPA6NHQ4 379 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 MYMKA6NI61 221 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 TTLL13PA6NNM8 815 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 MEIS3P2A8K0S8 358 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 POLR2DO15514 142 aaKnown RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 CSPG5O95196 566 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 EOMESO95936 686 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 ITGA4P13612 1032 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 IDEP14735 1019 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 CTNNB1P35222 781 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 RAB27AP51159 221 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 EFNA5P52803 228 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 PCBP1Q15365 356 aaKnown RBP eCLIP12.21□□□□□ -0.45
LIG1-211ENST00000596457 AMHR2Q16671 573 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 NAALADL2Q58DX5 795 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 UBXN11Q5T124 520 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 TMEM192Q8IY95 271 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 CMTR2Q8IYT2 770 aaKnown RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 CRIPAKQ8N1N5 446 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 MICALL1Q8N3F8 863 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 FBXO22Q8NEZ5 403 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 SP7Q8TDD2 431 aaPredicted RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 GDPD5Q8WTR4 605 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 PPM1EQ8WY54 764 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 DDX12PQ92771 950 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 PGBD4Q96DM1 585 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 SCAND2PQ9GZW5 306 aaPredicted RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 FZD8Q9H461 694 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 LARSQ9P2J5 1176 aaKnown RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 HCSTQ9UBK5 93 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 ODF2LQ9ULJ1 636 aa12.21□□□□□ -0.45
LIG1-211ENST00000596457 MRPL42Q9Y6G3 142 aaKnown RBP12.21□□□□□ -0.45
LIG1-211ENST00000596457 COL4A4P53420 1690 aaPredicted RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 A0A1B0GVL5 298 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 ACKR2O00590 384 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 N4BP3O15049 544 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 HOXA2O43364 376 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 GTPBP6O43824 516 aaPredicted RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 EDN1P05305 212 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 ATF7P17544 494 aaPredicted RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 MATR3P43243 847 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG1-211ENST00000596457 ERVK-21P61565 698 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 STRN3Q13033 797 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms