RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CBX6O95503 412 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 LMNB1P20700 586 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 EPHB1P54762 984 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 EIF6P56537 245 aaKnown RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 FIGNQ5HY92 759 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 FAM47AQ5JRC9 791 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 FAM26FQ5R3K3 315 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 RIBC1Q8N443 379 aaPredicted RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 TTC8Q8TAM2 541 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 MED15Q96RN5 788 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 MYLK2Q9H1R3 596 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 BLOC1S6Q9UL45 172 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 PHTF1Q9UMS5 762 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 CEMIPQ8WUJ3 1361 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 FAM47DPA6NHR8 397 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 USP17L12C9JPN9 530 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 USP17L21D6R901 530 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 KDM1AO60341 852 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 ATP2C1P98194 919 aaPredicted RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 GALNT17Q6IS24 598 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 KRT80Q6KB66 452 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 BTNL9Q6UXG8 535 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 BBOF1Q8ND07 529 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 CFAP57Q96MR6 1250 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 NDEL1Q9GZM8 345 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 A6NHS1 94 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 CDH16O75309 829 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 OR52Z1P0C646 297 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 MX2P20592 715 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 RGS2P41220 211 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 TNNI2P48788 182 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 PPIDQ08752 370 aaKnown RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 FAM196AQ6ZSG2 479 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 MARK2Q7KZI7 788 aaKnown RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 CCDC125Q86Z20 511 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 UCMAQ8WVF2 138 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 MTBPQ96DY7 904 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 NSL1Q96IY1 281 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 UBE2OQ9C0C9 1292 aaKnown RBP13.13□□□□□ -0.31
LIG1-207ENST00000594759 PCDHB13Q9Y5F0 798 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 NCAPD2Q15021 1401 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 STRNO43815 780 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 GFPT2O94808 682 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 ITGA4P13612 1032 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 COPB2P35606 906 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 PMS1P54277 932 aaKnown RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 PDE1BQ01064 536 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 NONOQ15233 471 aaKnown RBP eCLIP13.12□□□□□ -0.31
LIG1-207ENST00000594759 KYNUQ16719 465 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 TRMT10CQ7L0Y3 403 aaKnown RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 PPP2R3CQ969Q6 453 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 THAP11Q96EK4 314 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 LRGUKQ96M69 825 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 PALMDQ9NP74 551 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 ZC3H4Q9UPT8 1303 aaKnown RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 B2RBV5 119 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 COQ9O75208 318 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 STK10O94804 968 aaKnown RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 CLPTM1O96005 669 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 PAEPP09466 180 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 STK4Q13043 487 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 NR1H3Q13133 447 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 TRIP10Q15642 601 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 TAF1BQ53T94 588 aaPredicted RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 FAM13CQ8NE31 585 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CXorf38Q8TB03 319 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 ACTRT1Q8TDG2 376 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 INPP5DQ92835 1189 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 ABHD8Q96I13 439 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 THTPAQ9BU02 230 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CCDC68Q9H2F9 335 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 A0A087X0T9 212 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 PRPF3O43395 683 aaKnown RBP13.12□□□□□ -0.31
LIG1-207ENST00000594759 FAM228BP0C875 321 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CCDC166P0CW27 439 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CNGA2Q16280 664 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 SLF2Q8IX21 1173 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 MAGEB18Q96M61 343 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CTNNAL1Q9UBT7 734 aa13.12□□□□□ -0.31
LIG1-207ENST00000594759 CYP19A1P11511 503 aaPredicted RBP13.11□□□□□ -0.31
LIG1-207ENST00000594759 VAV1P15498 845 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 LIN52Q52LA3 116 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 NLRP9Q7RTR0 991 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 RIMS1Q86UR5 1692 aaKnown RBP13.11□□□□□ -0.31
LIG1-207ENST00000594759 SYNGAP1Q96PV0 1343 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 TPBGLP0DKB5 382 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 CCNFP41002 786 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 GSTA3Q16772 222 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 PARP6Q2NL67 630 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 PIGWQ7Z7B1 504 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 MAPKAPK5Q8IW41 473 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 FITM2Q8N6M3 262 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 STRBPQ96SI9 672 aaKnown RBP13.11□□□□□ -0.31
LIG1-207ENST00000594759 PIH1D3Q9NQM4 214 aaKnown RBP13.11□□□□□ -0.31
LIG1-207ENST00000594759 ARHGEF3Q9NR81 526 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 ZNF180Q9UJW8 692 aa13.11□□□□□ -0.31
LIG1-207ENST00000594759 FAM196BA6NMK8 535 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 378.7 ms