RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 GPC2Q8N158 579 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 KRT222Q8N1A0 295 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 PLD6Q8N2A8 252 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 MAGEB6Q8N7X4 407 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 NETO1Q8TDF5 533 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 PNISRQ8TF01 805 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 PIBF1Q8WXW3 757 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 PMM1Q92871 262 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 TRMT2BQ96GJ1 504 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 BRIP1Q9BX63 1249 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 SMURF1Q9HCE7 757 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ZNF277Q9NRM2 450 aaPredicted RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 C14orf119Q9NWQ9 140 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 RNF186Q9NXI6 227 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 SAGE1Q9NXZ1 904 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 RSPH14Q9UHP6 348 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 NARFQ9UHQ1 456 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ZNF281Q9Y2X9 895 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 SLX4Q8IY92 1834 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 A0A1W2PP64 1363 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 TMEM265A0A087WTH1 108 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 FZD9O00144 591 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 AMY2AP04746 511 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 CT47B1P0C2W7 299 aaPredicted RBP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 AMY2BP19961 511 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 DDIT3P35638 169 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 EPS15P42566 896 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 GATA4P43694 442 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 GSCP56915 257 aaPredicted RBP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 RHBDL3P58872 404 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 SPIRE1Q08AE8 756 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 RABEP1Q15276 862 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 ZNF174Q15697 407 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 GPR19Q15760 415 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 PKN2Q16513 984 aaKnown RBP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 CPSF6Q16630 551 aaKnown RBP eCLIP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 GFOD2Q3B7J2 385 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 ARHGAP36Q6ZRI8 547 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 Q8N1Y9 231 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 C1orf162Q8NEQ5 155 aaPredicted RBP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 SHKBP1Q8TBC3 707 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 ITFG2Q969R8 447 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 FAXDC2Q96IV6 333 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 DEF6Q9H4E7 631 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 TCF7L1Q9HCS4 588 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 ATP13A1Q9HD20 1204 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 FAM53CQ9NYF3 392 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 CWC15Q9P013 229 aaKnown RBP6.69□□□□□ -1.34
SMAD4-208ENST00000589706 SPO11Q9Y5K1 396 aa6.69□□□□□ -1.34
SMAD4-208ENST00000589706 ANKRD31Q8N7Z5 1873 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CCDC196A0A1B0GTZ2 297 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 A0A1B0GUL7 405 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 KLHL33A6NCF5 533 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 NRDCO43847 1150 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 PLIN1O60240 522 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CFBP00751 764 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 COL6A2P12110 1019 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 SLC9A1P19634 815 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 FPR2P25090 351 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 U2AF2P26368 475 aaKnown RBP eCLIP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 LSP1P33241 339 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CYP2C19P33261 490 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 RECQLP46063 649 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 IRF9Q00978 393 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 PCBP2Q15366 365 aaKnown RBP eCLIP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CXorf57Q6NSI4 855 aaKnown RBP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 PGM2L1Q6PCE3 622 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 HHIPL2Q6UWX4 724 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 USP50Q70EL3 339 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 RASSF3Q86WH2 238 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 SYNE4Q8N205 404 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 TXLNBQ8N3L3 684 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 EPB41L1Q9H4G0 881 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 ARNT2Q9HBZ2 717 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 MARCH2Q9P0N8 246 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 GULP1Q9UBP9 304 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CTNNA3Q9UI47 895 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 ZNF652Q9Y2D9 606 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 ANKRD6Q9Y2G4 727 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 A0A0C4DFX4 3053 aa6.68□□□□□ -1.34
SMAD4-208ENST00000589706 SOS1Q07889 1333 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-208ENST00000589706 CACNA1SQ13698 1873 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 TCRBV5S4A2TA0A5A2 114 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 DVL2O14641 736 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 GSC2O15499 205 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 CYP26A1O43174 497 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 PPP1R11O60927 126 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-208ENST00000589706 IGLV1-40P01703 118 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 MYL1P05976 194 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 U2AF1L5P0DN76 240 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-208ENST00000589706 SRGNP10124 158 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 RBP3P10745 1247 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 PHC1P78364 1004 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 U2AF1Q01081 240 aaKnown RBP eCLIP6.67□□□□□ -1.34
SMAD4-208ENST00000589706 INSM1Q01101 510 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-208ENST00000589706 KIF23Q02241 960 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-208ENST00000589706 TCIRG1Q13488 830 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 UBE4AQ14139 1066 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 RAB3GAP1Q15042 981 aa6.67□□□□□ -1.34
SMAD4-208ENST00000589706 CCDC93Q567U6 631 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms